Climacium americanum (climacium_americanum)
Imported from atlas release summary for Climacium americanum.
648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
648
Candidate Genes
C4H
6.6%
POD
6.17%
C3'H/CYP98A
5.38%
BAHD
5.38%
4CL
4.77%
CYP76
3.79%
NMT
3.3%
IFS
3.3%
Other Families
61.31%
More Families (94)
PAL
51
3.12%
F3H
42
2.57%
STR
39
2.38%
IFR
37
2.26%
BR6OX2/CYP85A2
36
2.2%
F3'H/CYP75B
33
2.02%
UGT
33
2.02%
GS
32
1.96%
T3O
31
1.89%
DWF4/CYP90B1
31
1.89%
UFGT
30
1.83%
IO
28
1.71%
7DLGT
28
1.71%
CODM/T6ODM
26
1.59%
PYKS
26
1.59%
CAD
23
1.41%
SMT1/SMT2/SMT3
20
1.22%
CAS
20
1.22%
H6H
17
1.04%
TRI/TRII
17
1.04%
CYP71
17
1.04%
SLS
16
0.98%
CHS
16
0.98%
CYP90D1
16
0.98%
G8O/G8H
15
0.92%
CSE
15
0.92%
F3'5'H/CYP75A
14
0.86%
7DLH
13
0.79%
COMT
13
0.79%
NCS
12
0.73%
RAS
11
0.67%
CPD/CYP90A1
11
0.67%
SGD
10
0.61%
HCT
10
0.61%
LAMT
9
0.55%
16OMT
9
0.55%
LAC
9
0.55%
8HGO
8
0.49%
F5H/CYP84A
8
0.49%
COR
7
0.43%
ANR
7
0.43%
SQS/FDFT1
7
0.43%
BBE
6
0.37%
T16H
6
0.37%
CNMT
5
0.31%
TDC
5
0.31%
MPO
5
0.31%
PMT
5
0.31%
FNS
5
0.31%
CCR
5
0.31%
CPR
5
0.31%
BR6OX1/CYP85A1
5
0.31%
DWF5
5
0.31%
AACT
5
0.31%
CHI
4
0.24%
DET2
4
0.24%
GGPPS
4
0.24%
FPPS
4
0.24%
TPS
4
0.24%
MVD
4
0.24%
GES
3
0.18%
TYDC_DDC
3
0.18%
ADC
3
0.18%
FLS
3
0.18%
DFR
3
0.18%
TAT
3
0.18%
ROT3/CYP90C1
3
0.18%
SQE
3
0.18%
SMO1/SMO2
3
0.18%
MVK
3
0.18%
HDS/IspG
3
0.18%
MDS/IspF
3
0.18%
6OMT_4OMT_SOMT
2
0.12%
CYP719
2
0.12%
CCoAOMT
2
0.12%
CYP51G1
2
0.12%
HMGS
2
0.12%
MCT/IspD
2
0.12%
ISY
1
0.06%
CYP80B1
1
0.06%
ANS/LDOX
1
0.06%
HPPR
1
0.06%
HYD1
1
0.06%
FK
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
HDR/IspH
1
0.06%
CMK/IspE
1
0.06%
PMK
1
0.06%
DXR
1
0.06%
DXS
1
0.06%
HMGR
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 173 | 10 | POD (95) | View species results |
| Terpenoid pathway | 155 | 19 | BAHD (57) | View species results |
| Alkaloid pathway | 119 | 18 | NMT (27) | View species results |
| Flavonoid pathway | 88 | 8 | UFGT (28) | View species results |
| Rosmarinic acid pathway | 73 | 7 | C4H (30) | View species results |
| Steroid pathway | 40 | 12 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 600 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 109 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CLame532260005780 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame563570008220 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame564350008700 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame635350017210 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| CLame636370018010 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| CLame636530018230 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| CLame641890020800 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame648220026210 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame649410029020 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame651950034540 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| CLame652330035290 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame652970037080 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| CLame652970037090 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| CLame653970040340 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| CLame654670043170 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| CLame657430056890 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| CLame659540071950 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| CLame659670072950 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame659670072960 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame659700073260 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| CLame660020076140 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame660020076160 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame660560080390 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame660670081760 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| CLame660870083930 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame660940085060 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame661420088930 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| CLame661420088940 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame661420088950 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame661420088990 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| CLame661760092200 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| CLame661970094800 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| CLame662030095520 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| CLame662050095860 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| CLame662140097050 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| CLame662370099260 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame662440100320 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| CLame662670103250 | Phenylpropanoid | POD | medium | pass | POD__00023__sp_Q9M7T0_PRX2F_ARATH |
| CLame663030107870 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| CLame663370112170 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame663370112190 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| CLame663390112530 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| CLame663730116710 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| CLame663830118380 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame663940119060 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| CLame664140121400 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| CLame664430124850 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| CLame664510126160 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame664680128570 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| CLame664680128620 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |