PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
CLame532030005260 Flavonoid IFS medium borderline
CLame613670013600 Flavonoid IFS medium borderline
CLame618190014820 Flavonoid IFS low borderline
CLame635880017740 Flavonoid IFS medium borderline
CLame635880017760 Flavonoid IFS medium borderline
CLame640490019190 Flavonoid IFS medium borderline
CLame651650033530 Flavonoid IFS low borderline
CLame654100040570 Flavonoid IFS low borderline
CLame655200046040 Flavonoid IFS medium borderline
CLame656040049970 Flavonoid IFS medium borderline
CLame656330051260 Flavonoid IFS low borderline
CLame657090055350 Flavonoid IFS low borderline
CLame657090055360 Flavonoid IFS low borderline
CLame657460057200 Flavonoid IFS medium borderline
CLame658010060610 Flavonoid IFS medium borderline
CLame658830066340 Flavonoid IFS medium borderline
CLame661400088570 Flavonoid IFS medium borderline
CLame662790104520 Flavonoid IFS medium borderline
CLame662800104610 Flavonoid IFS medium borderline
CLame662800104660 Flavonoid IFS medium borderline
CLame663290111050 Flavonoid IFS medium borderline
CLame664320123820 Flavonoid IFS low borderline
CLame664860132530 Flavonoid IFS low borderline
CLame664860132540 Flavonoid IFS low borderline
CLame665170138640 Flavonoid IFS medium borderline
CLame665490145190 Flavonoid IFS medium borderline
CLame665600147380 Flavonoid IFS medium borderline
CLame665600147410 Flavonoid IFS medium borderline
CLame665930153210 Flavonoid IFS medium borderline
CLame666000154680 Flavonoid IFS low borderline
CLame666030155380 Flavonoid IFS low borderline
CLame666330161280 Flavonoid IFS low borderline
CLame666330161340 Flavonoid IFS low borderline
CLame666430164060 Flavonoid IFS medium borderline
CLame666470164930 Flavonoid IFS low borderline
CLame666540166540 Flavonoid IFS low borderline
CLame666890173770 Flavonoid IFS low borderline
CLame667010176760 Flavonoid IFS low borderline
CLame667550192540 Flavonoid IFS medium borderline
CLame667550192560 Flavonoid IFS medium borderline
CLame667630194730 Flavonoid IFS low borderline
CLame667750198640 Flavonoid IFS low borderline
CLame667750198670 Flavonoid IFS low borderline
CLame667830200970 Flavonoid IFS low borderline
CLame667830201000 Flavonoid IFS low borderline
CLame667920203800 Flavonoid IFS low borderline
CLame667990205480 Flavonoid IFS low borderline
CLame668030206150 Flavonoid IFS low borderline
CLame668030206170 Flavonoid IFS low borderline
CLame668500221090 Flavonoid IFS low borderline