PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
CLame450180000300 Rosmarinic Acid 4CL low borderline
CLame613060013190 Rosmarinic Acid 4CL medium pass
CLame655000045090 Rosmarinic Acid 4CL medium pass
CLame655460047170 Rosmarinic Acid 4CL medium pass
CLame655710048510 Rosmarinic Acid 4CL low borderline
CLame655950049240 Rosmarinic Acid 4CL low borderline
CLame657010054920 Rosmarinic Acid 4CL low borderline
CLame661600090410 Rosmarinic Acid 4CL low borderline
CLame662390099540 Rosmarinic Acid 4CL low borderline
CLame662390099550 Rosmarinic Acid 4CL medium pass
CLame662930106330 Rosmarinic Acid 4CL low borderline
CLame664210122040 Rosmarinic Acid 4CL medium pass
CLame664210122340 Rosmarinic Acid 4CL low borderline
CLame664750129690 Rosmarinic Acid 4CL medium pass
CLame665490145270 Rosmarinic Acid 4CL low borderline
CLame667210183040 Rosmarinic Acid 4CL medium pass
CLame667210183050 Rosmarinic Acid 4CL medium pass
CLame667720197330 Rosmarinic Acid 4CL medium pass
CLame667750198700 Rosmarinic Acid 4CL medium pass
CLame667970204550 Rosmarinic Acid 4CL medium pass
CLame668070207380 Rosmarinic Acid 4CL low borderline
CLame668220211600 Rosmarinic Acid 4CL medium pass
CLame668500221040 Rosmarinic Acid 4CL low borderline
CLame668690226430 Rosmarinic Acid 4CL medium pass
CLame668690226670 Rosmarinic Acid 4CL medium pass
CLame668850229430 Rosmarinic Acid 4CL low borderline
CLame480070002690 Rosmarinic Acid C4H low borderline
CLame532030005260 Rosmarinic Acid C4H medium pass
CLame532200005650 Rosmarinic Acid C4H low borderline
CLame613670013600 Rosmarinic Acid C4H medium pass
CLame618190014820 Rosmarinic Acid C4H low borderline
CLame635880017740 Rosmarinic Acid C4H medium pass
CLame635880017760 Rosmarinic Acid C4H medium pass
CLame640490019190 Rosmarinic Acid C4H medium pass
CLame651650033530 Rosmarinic Acid C4H low borderline
CLame654160040850 Rosmarinic Acid C4H low borderline
CLame654160040860 Rosmarinic Acid C4H low borderline
CLame654970044900 Rosmarinic Acid C4H low borderline
CLame655200046040 Rosmarinic Acid C4H medium pass
CLame656040049900 Rosmarinic Acid C4H low borderline
CLame656040049970 Rosmarinic Acid C4H low borderline
CLame656330051260 Rosmarinic Acid C4H low borderline
CLame656390051470 Rosmarinic Acid C4H low borderline
CLame656640052160 Rosmarinic Acid C4H low borderline
CLame657090055350 Rosmarinic Acid C4H low borderline
CLame657090055360 Rosmarinic Acid C4H low borderline
CLame657460057200 Rosmarinic Acid C4H medium pass
CLame658010060610 Rosmarinic Acid C4H low borderline
CLame658110061190 Rosmarinic Acid C4H low borderline
CLame658110061250 Rosmarinic Acid C4H low borderline