PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
Reset
Gene Pathway Family Confidence Status
CLame658330063090 Rosmarinic Acid C4H medium pass
CLame658330063100 Rosmarinic Acid C4H low borderline
CLame658830066340 Rosmarinic Acid C4H low borderline
CLame659810074340 Rosmarinic Acid C4H medium pass
CLame660090077100 Rosmarinic Acid C4H medium pass
CLame660150077420 Rosmarinic Acid C4H low borderline
CLame661400088570 Rosmarinic Acid C4H medium pass
CLame661600090380 Rosmarinic Acid C4H medium pass
CLame662070096180 Rosmarinic Acid C4H medium pass
CLame662790104520 Rosmarinic Acid C4H medium pass
CLame662790104530 Rosmarinic Acid C4H low borderline
CLame662800104610 Rosmarinic Acid C4H medium pass
CLame662800104660 Rosmarinic Acid C4H medium pass
CLame663220110360 Rosmarinic Acid C4H medium pass
CLame663290111050 Rosmarinic Acid C4H low borderline
CLame664070120390 Rosmarinic Acid C4H low borderline
CLame664140121290 Rosmarinic Acid C4H low borderline
CLame664320123820 Rosmarinic Acid C4H low borderline
CLame664610127640 Rosmarinic Acid C4H low borderline
CLame664750129650 Rosmarinic Acid C4H low borderline
CLame664750129660 Rosmarinic Acid C4H low borderline
CLame664750129670 Rosmarinic Acid C4H low borderline
CLame664790130410 Rosmarinic Acid C4H low borderline
CLame664950133980 Rosmarinic Acid C4H low borderline
CLame665010135670 Rosmarinic Acid C4H low borderline
CLame665170138640 Rosmarinic Acid C4H low borderline
CLame665230139880 Rosmarinic Acid C4H medium pass
CLame665230139890 Rosmarinic Acid C4H medium pass
CLame665490145190 Rosmarinic Acid C4H low borderline
CLame665600147380 Rosmarinic Acid C4H medium pass
CLame665600147410 Rosmarinic Acid C4H medium pass
CLame665930153210 Rosmarinic Acid C4H low borderline
CLame666000154620 Rosmarinic Acid C4H low borderline
CLame666000154680 Rosmarinic Acid C4H low borderline
CLame666030155380 Rosmarinic Acid C4H low borderline
CLame666030155420 Rosmarinic Acid C4H low borderline
CLame666330161280 Rosmarinic Acid C4H low borderline
CLame666330161300 Rosmarinic Acid C4H low borderline
CLame666330161340 Rosmarinic Acid C4H low borderline
CLame666410163430 Rosmarinic Acid C4H medium pass
CLame666430164060 Rosmarinic Acid C4H medium pass
CLame666540166540 Rosmarinic Acid C4H low borderline
CLame666890173770 Rosmarinic Acid C4H low borderline
CLame667040178430 Rosmarinic Acid C4H medium pass
CLame667070178780 Rosmarinic Acid C4H medium pass
CLame667200182760 Rosmarinic Acid C4H low borderline
CLame667310185680 Rosmarinic Acid C4H low borderline
CLame667450189310 Rosmarinic Acid C4H low borderline
CLame667510190550 Rosmarinic Acid C4H medium pass
CLame667550192540 Rosmarinic Acid C4H medium pass