PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
CLame606720011870 Alkaloid GS low borderline
CLame631830015670 Alkaloid GS high pass
CLame632480016380 Alkaloid GS low borderline
CLame636380018090 Alkaloid GS low borderline
CLame653680039320 Alkaloid GS low borderline
CLame653820039900 Alkaloid GS low borderline
CLame655720048590 Alkaloid GS low borderline
CLame656270050960 Alkaloid GS high pass
CLame658050061010 Alkaloid GS high pass
CLame658050061020 Alkaloid GS high pass
CLame658120061270 Alkaloid GS high pass
CLame658140061390 Alkaloid GS low borderline
CLame658490063850 Alkaloid GS low borderline
CLame659670073030 Alkaloid GS low borderline
CLame660590080760 Alkaloid GS low borderline
CLame661060086110 Alkaloid GS low borderline
CLame661060086120 Alkaloid GS low borderline
CLame661900093590 Alkaloid GS low borderline
CLame662940106520 Alkaloid GS low borderline
CLame663960119380 Alkaloid GS low borderline
CLame664350124000 Alkaloid GS medium pass
CLame664770129890 Alkaloid GS low borderline
CLame664790130570 Alkaloid GS low borderline
CLame666320161220 Alkaloid GS low borderline
CLame666620167720 Alkaloid GS low borderline
CLame667000176260 Alkaloid GS low borderline
CLame667170181600 Alkaloid GS low borderline
CLame667840201820 Alkaloid GS low borderline
CLame668370216580 Alkaloid GS low borderline
CLame668370216810 Alkaloid GS low borderline
CLame668370216820 Alkaloid GS low borderline
CLame669060234240 Alkaloid GS low borderline