PlantSME Plant secondary metabolism enzyme database

Climacium americanum (climacium_americanum)

Imported from atlas release summary for Climacium americanum.

648
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 173 10 POD (95) View species results
Terpenoid pathway 155 19 BAHD (57) View species results
Alkaloid pathway 119 18 NMT (27) View species results
Flavonoid pathway 88 8 UFGT (28) View species results
Rosmarinic acid pathway 73 7 C4H (30) View species results
Steroid pathway 40 12 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 600 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 109 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
CLame634210017010 Flavonoid IFR low borderline
CLame634210017020 Flavonoid IFR low borderline
CLame635450017480 Flavonoid IFR low borderline
CLame641760020660 Flavonoid IFR low borderline
CLame646650024180 Flavonoid IFR high pass
CLame649260028610 Flavonoid IFR low borderline
CLame651690033700 Flavonoid IFR low borderline
CLame655220046220 Flavonoid IFR low borderline
CLame655970049390 Flavonoid IFR low borderline
CLame658140061360 Flavonoid IFR low borderline
CLame658620065140 Flavonoid IFR low borderline
CLame660040076470 Flavonoid IFR low borderline
CLame660540080090 Flavonoid IFR low borderline
CLame660930084640 Flavonoid IFR low borderline
CLame660930084660 Flavonoid IFR low borderline
CLame661070086190 Flavonoid IFR medium pass
CLame662190097700 Flavonoid IFR low borderline
CLame662320098930 Flavonoid IFR low borderline
CLame662430100110 Flavonoid IFR low borderline
CLame662440100260 Flavonoid IFR low borderline
CLame663110108750 Flavonoid IFR low borderline
CLame663170109810 Flavonoid IFR low borderline
CLame663330111730 Flavonoid IFR low borderline
CLame665480144620 Flavonoid IFR low borderline
CLame665560146890 Flavonoid IFR low borderline
CLame665720148750 Flavonoid IFR low borderline
CLame666850172640 Flavonoid IFR low borderline
CLame666960175740 Flavonoid IFR low borderline
CLame667140181510 Flavonoid IFR low borderline
CLame667230183620 Flavonoid IFR low borderline
CLame667360186610 Flavonoid IFR low borderline
CLame667370187120 Flavonoid IFR low borderline
CLame667490190010 Flavonoid IFR low borderline
CLame667530191650 Flavonoid IFR medium pass
CLame667610194150 Flavonoid IFR low borderline
CLame668630225230 Flavonoid IFR low borderline
CLame668760227420 Flavonoid IFR low borderline