PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
silene_latifolia_GWHPCBIJ030826 silene_latifolia silene_latifolia_GWHPCBIJ030826
SIchi02G0004210.1 simmondsia_chinensis SIchi02G0004210.1
SIchi02G0004210.2 simmondsia_chinensis SIchi02G0004210.2
SIchi05G0002650.1 simmondsia_chinensis SIchi05G0002650.1
SIchi05G0002810.1 simmondsia_chinensis SIchi05G0002810.1
SIchi21G0001560.1 simmondsia_chinensis SIchi21G0001560.1
SIchi24G0000610.1 simmondsia_chinensis SIchi24G0000610.1
SalbSina_scaffold13050062710.1 sinapis_alba SalbSina_scaffold13050062710.1
SalbSina_scaffold21340171660.1 sinapis_alba SalbSina_scaffold21340171660.1
SalbSina_scaffold4140308150.1 sinapis_alba SalbSina_scaffold4140308150.1
SalbSina_scaffold5750375750.1 sinapis_alba SalbSina_scaffold5750375750.1
SalbSina_scaffold7520433410.1 sinapis_alba SalbSina_scaffold7520433410.1
SalbSina_scaffold760437700.1 sinapis_alba SalbSina_scaffold760437700.1
evm.TU.tig00000289.100_1_ORF1 siraitia_grosvenorii evm.TU.tig00000289.100_1_ORF1
evm.TU.tig00006791.1_1_ORF1 siraitia_grosvenorii evm.TU.tig00006791.1_1_ORF1
SiriSI_scaffold19410225640 sisymbrium_irio SiriSI_scaffold19410225640
SiriSI_scaffold22920266380 sisymbrium_irio SiriSI_scaffold22920266380
SiriSI_scaffold9460491010 sisymbrium_irio SiriSI_scaffold9460491010
solanum_aethiopicum_Soaet10008539 solanum_aethiopicum solanum_aethiopicum_Soaet10008539
solanum_galapagense_GWHPBJTJ015355 solanum_galapagense solanum_galapagense_GWHPBJTJ015355
solanum_galapagense_GWHPBJTJ019807 solanum_galapagense solanum_galapagense_GWHPBJTJ019807
solanum_galapagense_GWHPBJTJ021712 solanum_galapagense solanum_galapagense_GWHPBJTJ021712
solanum_galapagense_GWHPBJTJ029639 solanum_galapagense solanum_galapagense_GWHPBJTJ029639
solanum_galapagense_GWHPBJTJ029640 solanum_galapagense solanum_galapagense_GWHPBJTJ029640
solanum_habrochaites_GWHPBJTH019873 solanum_habrochaites solanum_habrochaites_GWHPBJTH019873
solanum_habrochaites_GWHPBJTH021786 solanum_habrochaites solanum_habrochaites_GWHPBJTH021786
solanum_habrochaites_GWHPBJTH029006 solanum_habrochaites solanum_habrochaites_GWHPBJTH029006
solanum_habrochaites_GWHPBJTH029144 solanum_habrochaites solanum_habrochaites_GWHPBJTH029144
solanum_habrochaites_GWHPBJTH029392 solanum_habrochaites solanum_habrochaites_GWHPBJTH029392
solanum_habrochaites_GWHPBJTH029756 solanum_habrochaites solanum_habrochaites_GWHPBJTH029756