PlantSME Plant secondary metabolism enzyme database

Amaranthus palmeri (amaranthus_palmeri)

Imported from atlas release summary for Amaranthus palmeri.

1105
Candidate Genes
98
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.69% Phenylpropanoid pathway 24.89% Alkaloid pathway 22.35% Flavonoid pathway 13.85% Rosmarinic acid pathway 6.24% Steroid pathway 4.98%
Family Distribution
C4H 8.31% C3'H/CYP98A 5.99% POD 5.82% BAHD 5.1% CYP76 4.58% UGT 4.31% 7DLGT 3.9% UFGT 3.9%
Other Families 58.09%
More Families (90)
4CL 93 3.18% IFS 89 3.04% NMT 88 3.01% T3O 80 2.74% F3'H/CYP75B 76 2.6% DWF4/CYP90B1 64 2.19% G8O/G8H 60 2.05% BR6OX2/CYP85A2 57 1.95% F3H 49 1.68% STR 42 1.44% CAD 38 1.3% COMT 34 1.16% SMT1/SMT2/SMT3 33 1.13% CODM/T6ODM 32 1.09% H6H 32 1.09% F3'5'H/CYP75A 32 1.09% T16H 31 1.06% FNS 30 1.03% TRI/TRII 29 0.99% F5H/CYP84A 29 0.99% CAS 29 0.99% SLS 28 0.96% 16OMT 26 0.89% HCT 26 0.89% CYP71 26 0.89% RAS 25 0.86% SGD 24 0.82% LAC 24 0.82% BR6OX1/CYP85A1 24 0.82% PYKS 23 0.79% IFR 23 0.79% TPS 22 0.75% 7DLH 20 0.68% GES 20 0.68% BBE 19 0.65% CSE 19 0.65% ANR 17 0.58% GS 16 0.55% LAMT 16 0.55% CYP90D1 16 0.55% PMT 14 0.48% FPPS 14 0.48% IO 13 0.44% TAT 12 0.41% 8HGO 10 0.34% ANS/LDOX 10 0.34% CCR 8 0.27% ROT3/CYP90C1 8 0.27% TYDC_DDC 7 0.24% HPPR 7 0.24% CPD/CYP90A1 7 0.24% CYP51G1 7 0.24% CYP80B1 6 0.21% CNMT 6 0.21% CPR 6 0.21% XMT_MXMT_DXMT 5 0.17% TDC 5 0.17% COR 5 0.17% MPO 5 0.17% CCoAOMT 5 0.17% DWF7 5 0.17% HYD1 5 0.17% GGPPS 5 0.17% AACT 5 0.17% NCS 4 0.14% CYP719 4 0.14% SQS/FDFT1 4 0.14% SMO1/SMO2 4 0.14% MVD 4 0.14% ISY 3 0.1% DFR 3 0.1% CHI 3 0.1% DET2 3 0.1% HMGR 3 0.1% GPPS 3 0.1% CHS 2 0.07% SQE 2 0.07% MVK 2 0.07% IDI 2 0.07% 6OMT_4OMT_SOMT 1 0.03% CYP80F1 1 0.03% FLS 1 0.03% DWF1 1 0.03% DWF5 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% DXS 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 306 14 UGT (110) View species results
Phenylpropanoid pathway 275 12 POD (154) View species results
Alkaloid pathway 247 18 7DLGT (54) View species results
Flavonoid pathway 153 10 UFGT (108) View species results
Rosmarinic acid pathway 69 6 C4H (22) View species results
Steroid pathway 55 10 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1230 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 200 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
MAKER_00772-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
MAKER_00778-RA Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
MAKER_01153-RA Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
MAKER_01159-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
MAKER_02310-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_03878-RA Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
MAKER_06859-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
MAKER_07226-RA Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
MAKER_07658-RA Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
MAKER_08488-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
MAKER_08491-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
MAKER_09467-RA Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_12757-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_12823-RA Phenylpropanoid CAD low borderline CAD__00014__sp_Q2KNL5_CADH1_OCIBA
MAKER_12952-RA Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
MAKER_15429-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_15434-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_15683-RA Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
MAKER_17073-RA Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
MAKER_17621-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_17623-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_17624-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_17781-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_17882-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_17890-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_18384-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_19209-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_19210-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_19211-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_19212-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_19213-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_20230-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_20584-RA Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
MAKER_24158-RA Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
MAKER_25484-RA Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
MAKER_25629-RA Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
MAKER_30440-RA Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
MAKER_35565-RA Phenylpropanoid CAD low borderline CAD__00007__sp_O24562_CADH_MAIZE