PlantSME Plant secondary metabolism enzyme database

Amaranthus palmeri (amaranthus_palmeri)

Imported from atlas release summary for Amaranthus palmeri.

1105
Candidate Genes
98
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.69% Phenylpropanoid pathway 24.89% Alkaloid pathway 22.35% Flavonoid pathway 13.85% Rosmarinic acid pathway 6.24% Steroid pathway 4.98%
Family Distribution
C4H 8.31% C3'H/CYP98A 5.99% POD 5.82% BAHD 5.1% CYP76 4.58% UGT 4.31% 7DLGT 3.9% UFGT 3.9%
Other Families 58.09%
More Families (90)
4CL 93 3.18% IFS 89 3.04% NMT 88 3.01% T3O 80 2.74% F3'H/CYP75B 76 2.6% DWF4/CYP90B1 64 2.19% G8O/G8H 60 2.05% BR6OX2/CYP85A2 57 1.95% F3H 49 1.68% STR 42 1.44% CAD 38 1.3% COMT 34 1.16% SMT1/SMT2/SMT3 33 1.13% CODM/T6ODM 32 1.09% H6H 32 1.09% F3'5'H/CYP75A 32 1.09% T16H 31 1.06% FNS 30 1.03% TRI/TRII 29 0.99% F5H/CYP84A 29 0.99% CAS 29 0.99% SLS 28 0.96% 16OMT 26 0.89% HCT 26 0.89% CYP71 26 0.89% RAS 25 0.86% SGD 24 0.82% LAC 24 0.82% BR6OX1/CYP85A1 24 0.82% PYKS 23 0.79% IFR 23 0.79% TPS 22 0.75% 7DLH 20 0.68% GES 20 0.68% BBE 19 0.65% CSE 19 0.65% ANR 17 0.58% GS 16 0.55% LAMT 16 0.55% CYP90D1 16 0.55% PMT 14 0.48% FPPS 14 0.48% IO 13 0.44% TAT 12 0.41% 8HGO 10 0.34% ANS/LDOX 10 0.34% CCR 8 0.27% ROT3/CYP90C1 8 0.27% TYDC_DDC 7 0.24% HPPR 7 0.24% CPD/CYP90A1 7 0.24% CYP51G1 7 0.24% CYP80B1 6 0.21% CNMT 6 0.21% CPR 6 0.21% XMT_MXMT_DXMT 5 0.17% TDC 5 0.17% COR 5 0.17% MPO 5 0.17% CCoAOMT 5 0.17% DWF7 5 0.17% HYD1 5 0.17% GGPPS 5 0.17% AACT 5 0.17% NCS 4 0.14% CYP719 4 0.14% SQS/FDFT1 4 0.14% SMO1/SMO2 4 0.14% MVD 4 0.14% ISY 3 0.1% DFR 3 0.1% CHI 3 0.1% DET2 3 0.1% HMGR 3 0.1% GPPS 3 0.1% CHS 2 0.07% SQE 2 0.07% MVK 2 0.07% IDI 2 0.07% 6OMT_4OMT_SOMT 1 0.03% CYP80F1 1 0.03% FLS 1 0.03% DWF1 1 0.03% DWF5 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% DXS 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 306 14 UGT (110) View species results
Phenylpropanoid pathway 275 12 POD (154) View species results
Alkaloid pathway 247 18 7DLGT (54) View species results
Flavonoid pathway 153 10 UFGT (108) View species results
Rosmarinic acid pathway 69 6 C4H (22) View species results
Steroid pathway 55 10 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1230 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 200 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
MAKER_03628-RA Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
MAKER_03946-RA Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
MAKER_10796-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_13267-RA Alkaloid GES low borderline GES__00002__sp_C0KWV4_GRNLG_PERFH
MAKER_13470-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_15325-RA Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
MAKER_15428-RA Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
MAKER_15429-RA Alkaloid GES medium pass GES__00007__sp_Q6USK1_GERS_OCIBA
MAKER_17621-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_17623-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_17624-RA Alkaloid GES medium pass GES__00002__sp_C0KWV4_GRNLG_PERFH
MAKER_17882-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_17890-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_18384-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_20230-RA Alkaloid GES low borderline GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_22358-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_22685-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_24158-RA Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
MAKER_25899-RA Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
MAKER_32338-RA Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE