Amaranthus palmeri (amaranthus_palmeri)
Imported from atlas release summary for Amaranthus palmeri.
1105
Candidate Genes
98
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1105
Candidate Genes
C4H
8.31%
C3'H/CYP98A
5.99%
POD
5.82%
BAHD
5.1%
CYP76
4.58%
UGT
4.31%
7DLGT
3.9%
UFGT
3.9%
Other Families
58.09%
More Families (90)
4CL
93
3.18%
IFS
89
3.04%
NMT
88
3.01%
T3O
80
2.74%
F3'H/CYP75B
76
2.6%
DWF4/CYP90B1
64
2.19%
G8O/G8H
60
2.05%
BR6OX2/CYP85A2
57
1.95%
F3H
49
1.68%
STR
42
1.44%
CAD
38
1.3%
COMT
34
1.16%
SMT1/SMT2/SMT3
33
1.13%
CODM/T6ODM
32
1.09%
H6H
32
1.09%
F3'5'H/CYP75A
32
1.09%
T16H
31
1.06%
FNS
30
1.03%
TRI/TRII
29
0.99%
F5H/CYP84A
29
0.99%
CAS
29
0.99%
SLS
28
0.96%
16OMT
26
0.89%
HCT
26
0.89%
CYP71
26
0.89%
RAS
25
0.86%
SGD
24
0.82%
LAC
24
0.82%
BR6OX1/CYP85A1
24
0.82%
PYKS
23
0.79%
IFR
23
0.79%
TPS
22
0.75%
7DLH
20
0.68%
GES
20
0.68%
BBE
19
0.65%
CSE
19
0.65%
ANR
17
0.58%
GS
16
0.55%
LAMT
16
0.55%
CYP90D1
16
0.55%
PMT
14
0.48%
FPPS
14
0.48%
IO
13
0.44%
TAT
12
0.41%
8HGO
10
0.34%
ANS/LDOX
10
0.34%
CCR
8
0.27%
ROT3/CYP90C1
8
0.27%
TYDC_DDC
7
0.24%
HPPR
7
0.24%
CPD/CYP90A1
7
0.24%
CYP51G1
7
0.24%
CYP80B1
6
0.21%
CNMT
6
0.21%
CPR
6
0.21%
XMT_MXMT_DXMT
5
0.17%
TDC
5
0.17%
COR
5
0.17%
MPO
5
0.17%
CCoAOMT
5
0.17%
DWF7
5
0.17%
HYD1
5
0.17%
GGPPS
5
0.17%
AACT
5
0.17%
NCS
4
0.14%
CYP719
4
0.14%
SQS/FDFT1
4
0.14%
SMO1/SMO2
4
0.14%
MVD
4
0.14%
ISY
3
0.1%
DFR
3
0.1%
CHI
3
0.1%
DET2
3
0.1%
HMGR
3
0.1%
GPPS
3
0.1%
CHS
2
0.07%
SQE
2
0.07%
MVK
2
0.07%
IDI
2
0.07%
6OMT_4OMT_SOMT
1
0.03%
CYP80F1
1
0.03%
FLS
1
0.03%
DWF1
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
DXS
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 306 | 14 | UGT (110) | View species results |
| Phenylpropanoid pathway | 275 | 12 | POD (154) | View species results |
| Alkaloid pathway | 247 | 18 | 7DLGT (54) | View species results |
| Flavonoid pathway | 153 | 10 | UFGT (108) | View species results |
| Rosmarinic acid pathway | 69 | 6 | C4H (22) | View species results |
| Steroid pathway | 55 | 10 | CAS (20) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1230 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 200 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| MAKER_00932-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_04044-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| MAKER_04046-RA | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| MAKER_04047-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| MAKER_04424-RA | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_07592-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| MAKER_10667-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| MAKER_10688-RA | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_11597-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| MAKER_13400-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| MAKER_13401-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| MAKER_15152-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| MAKER_16577-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| MAKER_18199-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_23152-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| MAKER_23562-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| MAKER_25960-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_29615-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_29616-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_29617-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_30847-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| MAKER_31120-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_31122-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| MAKER_31123-RA | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_31987-RA | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| MAKER_34592-RA | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| MAKER_34593-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| MAKER_34597-RA | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| MAKER_35626-RA | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |