PlantSME Plant secondary metabolism enzyme database

Amaranthus palmeri (amaranthus_palmeri)

Imported from atlas release summary for Amaranthus palmeri.

1105
Family-Level Assignments
98
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.69% Phenylpropanoid pathway 24.89% Alkaloid pathway 22.35% Flavonoid pathway 13.85% Rosmarinic acid pathway 6.24% Steroid pathway 4.98%
Family Distribution
C4H 8.31% C3'H/CYP98A 5.99% POD 5.82% BAHD 5.1% CYP76 4.58% UGT 4.31% 7DLGT 3.9% UFGT 3.9%
Other Families 58.09%
More Families (90)
4CL 93 3.18% IFS 89 3.04% NMT 88 3.01% T3O 80 2.74% F3'H/CYP75B 76 2.6% DWF4/CYP90B1 64 2.19% G8O/G8H 60 2.05% BR6OX2/CYP85A2 57 1.95% F3H 49 1.68% STR 42 1.44% CAD 38 1.3% COMT 34 1.16% SMT1/SMT2/SMT3 33 1.13% CODM/T6ODM 32 1.09% H6H 32 1.09% F3'5'H/CYP75A 32 1.09% T16H 31 1.06% FNS 30 1.03% TRI/TRII 29 0.99% F5H/CYP84A 29 0.99% CAS 29 0.99% SLS 28 0.96% 16OMT 26 0.89% HCT 26 0.89% CYP71 26 0.89% RAS 25 0.86% SGD 24 0.82% LAC 24 0.82% BR6OX1/CYP85A1 24 0.82% PYKS 23 0.79% IFR 23 0.79% TPS 22 0.75% 7DLH 20 0.68% GES 20 0.68% BBE 19 0.65% CSE 19 0.65% ANR 17 0.58% GS 16 0.55% LAMT 16 0.55% CYP90D1 16 0.55% PMT 14 0.48% FPPS 14 0.48% IO 13 0.44% TAT 12 0.41% 8HGO 10 0.34% ANS/LDOX 10 0.34% CCR 8 0.27% ROT3/CYP90C1 8 0.27% TYDC_DDC 7 0.24% HPPR 7 0.24% CPD/CYP90A1 7 0.24% CYP51G1 7 0.24% CYP80B1 6 0.21% CNMT 6 0.21% CPR 6 0.21% XMT_MXMT_DXMT 5 0.17% TDC 5 0.17% COR 5 0.17% MPO 5 0.17% CCoAOMT 5 0.17% DWF7 5 0.17% HYD1 5 0.17% GGPPS 5 0.17% AACT 5 0.17% NCS 4 0.14% CYP719 4 0.14% SQS/FDFT1 4 0.14% SMO1/SMO2 4 0.14% MVD 4 0.14% ISY 3 0.1% DFR 3 0.1% CHI 3 0.1% DET2 3 0.1% HMGR 3 0.1% GPPS 3 0.1% CHS 2 0.07% SQE 2 0.07% MVK 2 0.07% IDI 2 0.07% 6OMT_4OMT_SOMT 1 0.03% CYP80F1 1 0.03% FLS 1 0.03% DWF1 1 0.03% DWF5 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% DXS 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 306 14 UGT (110) View species results
Phenylpropanoid pathway 275 12 POD (154) View species results
Alkaloid pathway 247 18 7DLGT (54) View species results
Flavonoid pathway 153 10 UFGT (108) View species results
Rosmarinic acid pathway 69 6 C4H (22) View species results
Steroid pathway 55 10 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1230 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 200 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status Best Target
MAKER_27639-RA Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
MAKER_27652-RA Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
MAKER_29773-RA Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
MAKER_30785-RA Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
MAKER_30787-RA Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
MAKER_31037-RA Alkaloid G8O/G8H medium pass G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
MAKER_31919-RA Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
MAKER_31920-RA Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
MAKER_32725-RA Alkaloid G8O/G8H medium pass G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
MAKER_36844-RA Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU