Amaranthus palmeri (amaranthus_palmeri)
Imported from atlas release summary for Amaranthus palmeri.
1105
Candidate Genes
98
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1105
Candidate Genes
C4H
8.31%
C3'H/CYP98A
5.99%
POD
5.82%
BAHD
5.1%
CYP76
4.58%
UGT
4.31%
7DLGT
3.9%
UFGT
3.9%
Other Families
58.09%
More Families (90)
4CL
93
3.18%
IFS
89
3.04%
NMT
88
3.01%
T3O
80
2.74%
F3'H/CYP75B
76
2.6%
DWF4/CYP90B1
64
2.19%
G8O/G8H
60
2.05%
BR6OX2/CYP85A2
57
1.95%
F3H
49
1.68%
STR
42
1.44%
CAD
38
1.3%
COMT
34
1.16%
SMT1/SMT2/SMT3
33
1.13%
CODM/T6ODM
32
1.09%
H6H
32
1.09%
F3'5'H/CYP75A
32
1.09%
T16H
31
1.06%
FNS
30
1.03%
TRI/TRII
29
0.99%
F5H/CYP84A
29
0.99%
CAS
29
0.99%
SLS
28
0.96%
16OMT
26
0.89%
HCT
26
0.89%
CYP71
26
0.89%
RAS
25
0.86%
SGD
24
0.82%
LAC
24
0.82%
BR6OX1/CYP85A1
24
0.82%
PYKS
23
0.79%
IFR
23
0.79%
TPS
22
0.75%
7DLH
20
0.68%
GES
20
0.68%
BBE
19
0.65%
CSE
19
0.65%
ANR
17
0.58%
GS
16
0.55%
LAMT
16
0.55%
CYP90D1
16
0.55%
PMT
14
0.48%
FPPS
14
0.48%
IO
13
0.44%
TAT
12
0.41%
8HGO
10
0.34%
ANS/LDOX
10
0.34%
CCR
8
0.27%
ROT3/CYP90C1
8
0.27%
TYDC_DDC
7
0.24%
HPPR
7
0.24%
CPD/CYP90A1
7
0.24%
CYP51G1
7
0.24%
CYP80B1
6
0.21%
CNMT
6
0.21%
CPR
6
0.21%
XMT_MXMT_DXMT
5
0.17%
TDC
5
0.17%
COR
5
0.17%
MPO
5
0.17%
CCoAOMT
5
0.17%
DWF7
5
0.17%
HYD1
5
0.17%
GGPPS
5
0.17%
AACT
5
0.17%
NCS
4
0.14%
CYP719
4
0.14%
SQS/FDFT1
4
0.14%
SMO1/SMO2
4
0.14%
MVD
4
0.14%
ISY
3
0.1%
DFR
3
0.1%
CHI
3
0.1%
DET2
3
0.1%
HMGR
3
0.1%
GPPS
3
0.1%
CHS
2
0.07%
SQE
2
0.07%
MVK
2
0.07%
IDI
2
0.07%
6OMT_4OMT_SOMT
1
0.03%
CYP80F1
1
0.03%
FLS
1
0.03%
DWF1
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
DXS
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 306 | 14 | UGT (110) | View species results |
| Phenylpropanoid pathway | 275 | 12 | POD (154) | View species results |
| Alkaloid pathway | 247 | 18 | 7DLGT (54) | View species results |
| Flavonoid pathway | 153 | 10 | UFGT (108) | View species results |
| Rosmarinic acid pathway | 69 | 6 | C4H (22) | View species results |
| Steroid pathway | 55 | 10 | CAS (20) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1230 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 200 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| MAKER_10395-RA | Terpenoid | UGT | medium | pass | UGT__00021__sp_A7MAS5_75L17_MALDO |
| MAKER_10747-RA | Terpenoid | UGT | medium | pass | UGT__00088__sp_Q9LK73_U88A1_ARATH |
| MAKER_10748-RA | Terpenoid | UGT | medium | pass | UGT__00088__sp_Q9LK73_U88A1_ARATH |
| MAKER_10807-RA | Terpenoid | UGT | medium | pass | UGT__00001__sp_A0A067YB04_UGT1_PUEML |
| MAKER_11097-RA | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| MAKER_11167-RA | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| MAKER_11550-RA | Terpenoid | UGT | medium | pass | UGT__00037__sp_I1LCI8_FG2KO_SOYBN |
| MAKER_12332-RA | Terpenoid | UGT | low | borderline | UGT__00078__sp_Q8W491_U73B3_ARATH |
| MAKER_12770-RA | Terpenoid | UGT | low | borderline | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| MAKER_13242-RA | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| MAKER_13261-RA | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| MAKER_14081-RA | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| MAKER_15375-RA | Terpenoid | UGT | medium | pass | UGT__00022__sp_B2XBQ5_85A19_PRUDU |
| MAKER_15662-RA | Terpenoid | UGT | medium | pass | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| MAKER_15663-RA | Terpenoid | UGT | medium | pass | UGT__00071__sp_Q6VAA6_U74G1_STERE |
| MAKER_17392-RA | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| MAKER_19065-RA | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| MAKER_19812-RA | Terpenoid | UGT | medium | pass | UGT__00048__sp_O22182_U84B1_ARATH |
| MAKER_20415-RA | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| MAKER_20493-RA | Terpenoid | UGT | medium | pass | UGT__00009__sp_A0A0G4DBR5_FG3N_SOYBN |
| MAKER_20644-RA | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| MAKER_20648-RA | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| MAKER_20818-RA | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| MAKER_20819-RA | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| MAKER_20987-RA | Terpenoid | UGT | medium | pass | UGT__00101__sp_Q9LVR1_U72E2_ARATH |
| MAKER_20988-RA | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| MAKER_21349-RA | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| MAKER_21351-RA | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| MAKER_21521-RA | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| MAKER_21523-RA | Terpenoid | UGT | low | borderline | UGT__00106__sp_Q9SKC5_U74D1_ARATH |
| MAKER_21524-RA | Terpenoid | UGT | medium | pass | UGT__00041__sp_K4GGT4_73C11_BARVU |
| MAKER_21939-RA | Terpenoid | UGT | medium | pass | UGT__00050__sp_O22822_U74F2_ARATH |
| MAKER_21940-RA | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| MAKER_22127-RA | Terpenoid | UGT | medium | pass | UGT__00088__sp_Q9LK73_U88A1_ARATH |
| MAKER_23179-RA | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| MAKER_23180-RA | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| MAKER_23386-RA | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| MAKER_24256-RA | Terpenoid | UGT | low | borderline | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| MAKER_24257-RA | Terpenoid | UGT | medium | pass | UGT__00093__sp_Q9LR44_U75B1_ARATH |
| MAKER_24726-RA | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| MAKER_25800-RA | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| MAKER_27241-RA | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| MAKER_27243-RA | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| MAKER_27255-RA | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| MAKER_27562-RA | Terpenoid | UGT | low | borderline | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| MAKER_27952-RA | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| MAKER_27953-RA | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| MAKER_28017-RA | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| MAKER_28428-RA | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| MAKER_28430-RA | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |