PlantSME Plant secondary metabolism enzyme database

Amaranthus palmeri (amaranthus_palmeri)

Imported from atlas release summary for Amaranthus palmeri.

1388
Candidate Protein Records
1105
Pathway-Level Records
2923
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.69% Phenylpropanoid pathway 24.89% Alkaloid pathway 22.35% Flavonoid pathway 13.85% Rosmarinic acid pathway 6.24% Steroid pathway 4.98%
Family Distribution
C4H 8.31% C3'H/CYP98A 5.99% POD 5.82% BAHD 5.1% CYP76 4.58% UGT 4.31% 7DLGT 3.9% UFGT 3.9%
Other Families 58.09%
More Families (90)
4CL 93 3.18% IFS 89 3.04% NMT 88 3.01% T3O 80 2.74% F3'H/CYP75B 76 2.6% DWF4/CYP90B1 64 2.19% G8O/G8H 60 2.05% BR6OX2/CYP85A2 57 1.95% F3H 49 1.68% STR 42 1.44% CAD 38 1.3% COMT 34 1.16% SMT1/SMT2/SMT3 33 1.13% CODM/T6ODM 32 1.09% H6H 32 1.09% F3'5'H/CYP75A 32 1.09% T16H 31 1.06% FNS 30 1.03% TRI/TRII 29 0.99% F5H/CYP84A 29 0.99% CAS 29 0.99% SLS 28 0.96% 16OMT 26 0.89% HCT 26 0.89% CYP71 26 0.89% RAS 25 0.86% SGD 24 0.82% LAC 24 0.82% BR6OX1/CYP85A1 24 0.82% PYKS 23 0.79% IFR 23 0.79% TPS 22 0.75% 7DLH 20 0.68% GES 20 0.68% BBE 19 0.65% CSE 19 0.65% ANR 17 0.58% GS 16 0.55% LAMT 16 0.55% CYP90D1 16 0.55% PMT 14 0.48% FPPS 14 0.48% IO 13 0.44% TAT 12 0.41% 8HGO 10 0.34% ANS/LDOX 10 0.34% CCR 8 0.27% ROT3/CYP90C1 8 0.27% TYDC_DDC 7 0.24% HPPR 7 0.24% CPD/CYP90A1 7 0.24% CYP51G1 7 0.24% CYP80B1 6 0.21% CNMT 6 0.21% CPR 6 0.21% XMT_MXMT_DXMT 5 0.17% TDC 5 0.17% COR 5 0.17% MPO 5 0.17% CCoAOMT 5 0.17% DWF7 5 0.17% HYD1 5 0.17% GGPPS 5 0.17% AACT 5 0.17% NCS 4 0.14% CYP719 4 0.14% SQS/FDFT1 4 0.14% SMO1/SMO2 4 0.14% MVD 4 0.14% ISY 3 0.1% DFR 3 0.1% CHI 3 0.1% DET2 3 0.1% HMGR 3 0.1% GPPS 3 0.1% CHS 2 0.07% SQE 2 0.07% MVK 2 0.07% IDI 2 0.07% 6OMT_4OMT_SOMT 1 0.03% CYP80F1 1 0.03% FLS 1 0.03% DWF1 1 0.03% DWF5 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% DXS 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 306 14 UGT (110) View species results
Phenylpropanoid pathway 275 12 POD (154) View species results
Alkaloid pathway 247 18 7DLGT (54) View species results
Flavonoid pathway 153 10 UFGT (108) View species results
Rosmarinic acid pathway 69 6 C4H (22) View species results
Steroid pathway 55 10 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1230 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 200 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
MAKER_28568-RA Terpenoid UGT low borderline UGT__00115__sp_U3U992_UGT8_CATRO
MAKER_28608-RA Terpenoid UGT medium pass UGT__00035__sp_I1KEV6_FG3H_SOYBN
MAKER_28609-RA Terpenoid UGT medium pass UGT__00035__sp_I1KEV6_FG3H_SOYBN
MAKER_29043-RA Terpenoid UGT medium pass UGT__00112__sp_Q9ZQG4_U73B5_ARATH
MAKER_29149-RA Terpenoid UGT medium pass UGT__00047__sp_K7NBW3_74AC1_SIRGR
MAKER_29942-RA Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
MAKER_29943-RA Terpenoid UGT medium pass UGT__00098__sp_Q9LTH2_U76E2_ARATH
MAKER_29944-RA Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
MAKER_29945-RA Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
MAKER_30870-RA Terpenoid UGT medium pass UGT__00106__sp_Q9SKC5_U74D1_ARATH
MAKER_30872-RA Terpenoid UGT medium pass UGT__00106__sp_Q9SKC5_U74D1_ARATH
MAKER_30874-RA Terpenoid UGT medium pass UGT__00085__sp_Q9FIA0_U76C2_ARATH
MAKER_30928-RA Terpenoid UGT medium pass UGT__00055__sp_O48676_U74B1_ARATH
MAKER_30929-RA Terpenoid UGT medium pass UGT__00047__sp_K7NBW3_74AC1_SIRGR
MAKER_32091-RA Terpenoid UGT medium pass UGT__00034__sp_F8WLS6_UGT6_CATRO
MAKER_32372-RA Terpenoid UGT low borderline UGT__00022__sp_B2XBQ5_85A19_PRUDU
MAKER_32454-RA Terpenoid UGT low borderline UGT__00034__sp_F8WLS6_UGT6_CATRO
MAKER_32455-RA Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
MAKER_32456-RA Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
MAKER_32457-RA Terpenoid UGT medium pass UGT__00032__sp_F8WKW1_UGT2_GARJA
MAKER_33290-RA Terpenoid UGT medium pass UGT__00055__sp_O48676_U74B1_ARATH
MAKER_34323-RA Terpenoid UGT medium pass UGT__00112__sp_Q9ZQG4_U73B5_ARATH
MAKER_34777-RA Terpenoid UGT medium pass UGT__00047__sp_K7NBW3_74AC1_SIRGR
MAKER_34778-RA Terpenoid UGT low borderline UGT__00055__sp_O48676_U74B1_ARATH
MAKER_34939-RA Terpenoid UGT low borderline UGT__00096__sp_Q9LSY8_U71B2_ARATH
MAKER_36227-RA Terpenoid UGT medium pass UGT__00009__sp_A0A0G4DBR5_FG3N_SOYBN