PlantSME Plant secondary metabolism enzyme database

Amaranthus palmeri (amaranthus_palmeri)

Imported from atlas release summary for Amaranthus palmeri.

1388
Candidate Protein Records
1105
Pathway-Level Records
2923
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.69% Phenylpropanoid pathway 24.89% Alkaloid pathway 22.35% Flavonoid pathway 13.85% Rosmarinic acid pathway 6.24% Steroid pathway 4.98%
Family Distribution
C4H 8.31% C3'H/CYP98A 5.99% POD 5.82% BAHD 5.1% CYP76 4.58% UGT 4.31% 7DLGT 3.9% UFGT 3.9%
Other Families 58.09%
More Families (90)
4CL 93 3.18% IFS 89 3.04% NMT 88 3.01% T3O 80 2.74% F3'H/CYP75B 76 2.6% DWF4/CYP90B1 64 2.19% G8O/G8H 60 2.05% BR6OX2/CYP85A2 57 1.95% F3H 49 1.68% STR 42 1.44% CAD 38 1.3% COMT 34 1.16% SMT1/SMT2/SMT3 33 1.13% CODM/T6ODM 32 1.09% H6H 32 1.09% F3'5'H/CYP75A 32 1.09% T16H 31 1.06% FNS 30 1.03% TRI/TRII 29 0.99% F5H/CYP84A 29 0.99% CAS 29 0.99% SLS 28 0.96% 16OMT 26 0.89% HCT 26 0.89% CYP71 26 0.89% RAS 25 0.86% SGD 24 0.82% LAC 24 0.82% BR6OX1/CYP85A1 24 0.82% PYKS 23 0.79% IFR 23 0.79% TPS 22 0.75% 7DLH 20 0.68% GES 20 0.68% BBE 19 0.65% CSE 19 0.65% ANR 17 0.58% GS 16 0.55% LAMT 16 0.55% CYP90D1 16 0.55% PMT 14 0.48% FPPS 14 0.48% IO 13 0.44% TAT 12 0.41% 8HGO 10 0.34% ANS/LDOX 10 0.34% CCR 8 0.27% ROT3/CYP90C1 8 0.27% TYDC_DDC 7 0.24% HPPR 7 0.24% CPD/CYP90A1 7 0.24% CYP51G1 7 0.24% CYP80B1 6 0.21% CNMT 6 0.21% CPR 6 0.21% XMT_MXMT_DXMT 5 0.17% TDC 5 0.17% COR 5 0.17% MPO 5 0.17% CCoAOMT 5 0.17% DWF7 5 0.17% HYD1 5 0.17% GGPPS 5 0.17% AACT 5 0.17% NCS 4 0.14% CYP719 4 0.14% SQS/FDFT1 4 0.14% SMO1/SMO2 4 0.14% MVD 4 0.14% ISY 3 0.1% DFR 3 0.1% CHI 3 0.1% DET2 3 0.1% HMGR 3 0.1% GPPS 3 0.1% CHS 2 0.07% SQE 2 0.07% MVK 2 0.07% IDI 2 0.07% 6OMT_4OMT_SOMT 1 0.03% CYP80F1 1 0.03% FLS 1 0.03% DWF1 1 0.03% DWF5 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% DXS 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 306 14 UGT (110) View species results
Phenylpropanoid pathway 275 12 POD (154) View species results
Alkaloid pathway 247 18 7DLGT (54) View species results
Flavonoid pathway 153 10 UFGT (108) View species results
Rosmarinic acid pathway 69 6 C4H (22) View species results
Steroid pathway 55 10 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1230 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 200 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
MAKER_18404-RA Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
MAKER_18884-RA Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
MAKER_19457-RA Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
MAKER_19721-RA Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
MAKER_20724-RA Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
MAKER_20765-RA Alkaloid NMT medium borderline NMT__00010__sp_A4GE70_DXMT1_COFCA
MAKER_20997-RA Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
MAKER_21507-RA Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
MAKER_21754-RA Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
MAKER_21755-RA Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
MAKER_22077-RA Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
MAKER_22078-RA Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
MAKER_22242-RA Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
MAKER_22245-RA Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
MAKER_22277-RA Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
MAKER_22947-RA Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
MAKER_23227-RA Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
MAKER_23283-RA Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
MAKER_24059-RA Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
MAKER_24722-RA Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
MAKER_24786-RA Alkaloid NMT medium borderline NMT__00006__sp_A0A6C0WW38_CKCS_CAMSB
MAKER_25577-RA Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
MAKER_25835-RA Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
MAKER_26526-RA Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
MAKER_27030-RA Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
MAKER_27145-RA Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
MAKER_27462-RA Alkaloid NMT medium borderline NMT__00001__sp_A0A075D654_ANMT_RAUSE
MAKER_27906-RA Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
MAKER_27935-RA Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
MAKER_27936-RA Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
MAKER_27995-RA Alkaloid NMT low borderline NMT__00060__sp_Q9MAT5_ANM10_ARATH
MAKER_28035-RA Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
MAKER_28062-RA Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
MAKER_28409-RA Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
MAKER_28422-RA Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
MAKER_28918-RA Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
MAKER_29903-RA Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
MAKER_31768-RA Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
MAKER_31861-RA Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
MAKER_32628-RA Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
MAKER_32771-RA Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
MAKER_32897-RA Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
MAKER_32992-RA Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
MAKER_33163-RA Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
MAKER_34533-RA Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
MAKER_34537-RA Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
MAKER_34539-RA Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
MAKER_35371-RA Alkaloid NMT medium pass NMT__00062__sp_Q9SCP7_NAMT1_ARATH
MAKER_36007-RA Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
MAKER_36011-RA Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH