Amaranthus palmeri (amaranthus_palmeri)
Imported from atlas release summary for Amaranthus palmeri.
1388
Candidate Protein Records
1105
Pathway-Level Records
2923
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2923
Family-Level Calls
C4H
8.31%
C3'H/CYP98A
5.99%
POD
5.82%
BAHD
5.1%
CYP76
4.58%
UGT
4.31%
7DLGT
3.9%
UFGT
3.9%
Other Families
58.09%
More Families (90)
4CL
93
3.18%
IFS
89
3.04%
NMT
88
3.01%
T3O
80
2.74%
F3'H/CYP75B
76
2.6%
DWF4/CYP90B1
64
2.19%
G8O/G8H
60
2.05%
BR6OX2/CYP85A2
57
1.95%
F3H
49
1.68%
STR
42
1.44%
CAD
38
1.3%
COMT
34
1.16%
SMT1/SMT2/SMT3
33
1.13%
CODM/T6ODM
32
1.09%
H6H
32
1.09%
F3'5'H/CYP75A
32
1.09%
T16H
31
1.06%
FNS
30
1.03%
TRI/TRII
29
0.99%
F5H/CYP84A
29
0.99%
CAS
29
0.99%
SLS
28
0.96%
16OMT
26
0.89%
HCT
26
0.89%
CYP71
26
0.89%
RAS
25
0.86%
SGD
24
0.82%
LAC
24
0.82%
BR6OX1/CYP85A1
24
0.82%
PYKS
23
0.79%
IFR
23
0.79%
TPS
22
0.75%
7DLH
20
0.68%
GES
20
0.68%
BBE
19
0.65%
CSE
19
0.65%
ANR
17
0.58%
GS
16
0.55%
LAMT
16
0.55%
CYP90D1
16
0.55%
PMT
14
0.48%
FPPS
14
0.48%
IO
13
0.44%
TAT
12
0.41%
8HGO
10
0.34%
ANS/LDOX
10
0.34%
CCR
8
0.27%
ROT3/CYP90C1
8
0.27%
TYDC_DDC
7
0.24%
HPPR
7
0.24%
CPD/CYP90A1
7
0.24%
CYP51G1
7
0.24%
CYP80B1
6
0.21%
CNMT
6
0.21%
CPR
6
0.21%
XMT_MXMT_DXMT
5
0.17%
TDC
5
0.17%
COR
5
0.17%
MPO
5
0.17%
CCoAOMT
5
0.17%
DWF7
5
0.17%
HYD1
5
0.17%
GGPPS
5
0.17%
AACT
5
0.17%
NCS
4
0.14%
CYP719
4
0.14%
SQS/FDFT1
4
0.14%
SMO1/SMO2
4
0.14%
MVD
4
0.14%
ISY
3
0.1%
DFR
3
0.1%
CHI
3
0.1%
DET2
3
0.1%
HMGR
3
0.1%
GPPS
3
0.1%
CHS
2
0.07%
SQE
2
0.07%
MVK
2
0.07%
IDI
2
0.07%
6OMT_4OMT_SOMT
1
0.03%
CYP80F1
1
0.03%
FLS
1
0.03%
DWF1
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
DXS
1
0.03%
HMGS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 306 | 14 | UGT (110) | View species results |
| Phenylpropanoid pathway | 275 | 12 | POD (154) | View species results |
| Alkaloid pathway | 247 | 18 | 7DLGT (54) | View species results |
| Flavonoid pathway | 153 | 10 | UFGT (108) | View species results |
| Rosmarinic acid pathway | 69 | 6 | C4H (22) | View species results |
| Steroid pathway | 55 | 10 | CAS (20) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1230 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 200 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| mRNA22200 | Alkaloid | NMT | medium | pass |
| MAKER_00496-RA | Alkaloid | PMT | low | borderline |
| MAKER_01427-RA | Alkaloid | PMT | medium | pass |
| MAKER_03841-RA | Alkaloid | PMT | medium | pass |
| MAKER_05640-RA | Alkaloid | PMT | low | borderline |
| MAKER_07219-RA | Alkaloid | PMT | medium | borderline |
| MAKER_07668-RA | Alkaloid | PMT | medium | borderline |
| MAKER_09890-RA | Alkaloid | PMT | low | borderline |
| MAKER_17577-RA | Alkaloid | PMT | low | borderline |
| MAKER_21875-RA | Alkaloid | PMT | medium | pass |
| MAKER_23525-RA | Alkaloid | PMT | medium | pass |
| MAKER_28046-RA | Alkaloid | PMT | low | borderline |
| MAKER_28565-RA | Alkaloid | PMT | low | borderline |
| MAKER_31940-RA | Alkaloid | PMT | low | borderline |
| MAKER_33263-RA | Alkaloid | PMT | medium | borderline |
| MAKER_02041-RA | Alkaloid | PYKS | low | borderline |
| MAKER_03165-RA | Alkaloid | PYKS | low | borderline |
| MAKER_03465-RA | Alkaloid | PYKS | high | pass |
| MAKER_08034-RA | Alkaloid | PYKS | low | borderline |
| MAKER_12796-RA | Alkaloid | PYKS | low | borderline |
| MAKER_13190-RA | Alkaloid | PYKS | low | borderline |
| MAKER_13460-RA | Alkaloid | PYKS | low | borderline |
| MAKER_15951-RA | Alkaloid | PYKS | low | borderline |
| MAKER_16649-RA | Alkaloid | PYKS | low | borderline |
| MAKER_16675-RA | Alkaloid | PYKS | low | borderline |
| MAKER_18723-RA | Alkaloid | PYKS | low | borderline |
| MAKER_21185-RA | Alkaloid | PYKS | low | borderline |
| MAKER_23051-RA | Alkaloid | PYKS | low | borderline |
| MAKER_23629-RA | Alkaloid | PYKS | low | borderline |
| MAKER_24280-RA | Alkaloid | PYKS | low | borderline |
| MAKER_24429-RA | Alkaloid | PYKS | low | borderline |
| MAKER_27066-RA | Alkaloid | PYKS | low | borderline |
| MAKER_27298-RA | Alkaloid | PYKS | high | pass |
| MAKER_29257-RA | Alkaloid | PYKS | low | borderline |
| MAKER_30117-RA | Alkaloid | PYKS | low | borderline |
| MAKER_31564-RA | Alkaloid | PYKS | low | borderline |
| MAKER_34458-RA | Alkaloid | PYKS | low | borderline |
| mRNA24823.CDS2 | Alkaloid | PYKS | low | borderline |
| MAKER_04039-RA | Alkaloid | SGD | low | borderline |
| MAKER_10674-RA | Alkaloid | SGD | medium | pass |
| MAKER_12230-RA | Alkaloid | SGD | medium | pass |
| MAKER_12629-RA | Alkaloid | SGD | low | borderline |
| MAKER_13563-RA | Alkaloid | SGD | medium | pass |
| MAKER_15245-RA | Alkaloid | SGD | medium | pass |
| MAKER_17700-RA | Alkaloid | SGD | medium | pass |
| MAKER_17702-RA | Alkaloid | SGD | medium | pass |
| MAKER_19140-RA | Alkaloid | SGD | medium | pass |
| MAKER_19141-RA | Alkaloid | SGD | medium | pass |
| MAKER_19350-RA | Alkaloid | SGD | medium | pass |
| MAKER_19514-RA | Alkaloid | SGD | low | borderline |