PlantSME Plant secondary metabolism enzyme database

Amaranthus palmeri (amaranthus_palmeri)

Imported from atlas release summary for Amaranthus palmeri.

1388
Candidate Protein Records
1105
Pathway-Level Records
2923
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 306 14 UGT (110) View species results
Phenylpropanoid pathway 275 12 POD (154) View species results
Alkaloid pathway 247 18 7DLGT (54) View species results
Flavonoid pathway 153 10 UFGT (108) View species results
Rosmarinic acid pathway 69 6 C4H (22) View species results
Steroid pathway 55 10 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1230 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 200 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
MAKER_12823-RA Phenylpropanoid CAD low borderline
MAKER_12952-RA Phenylpropanoid CAD low borderline
MAKER_15429-RA Phenylpropanoid CAD low borderline
MAKER_15434-RA Phenylpropanoid CAD medium borderline
MAKER_15683-RA Phenylpropanoid CAD low borderline
MAKER_17073-RA Phenylpropanoid CAD low borderline
MAKER_17621-RA Phenylpropanoid CAD low borderline
MAKER_17623-RA Phenylpropanoid CAD low borderline
MAKER_17624-RA Phenylpropanoid CAD low borderline
MAKER_17781-RA Phenylpropanoid CAD medium borderline
MAKER_17882-RA Phenylpropanoid CAD low borderline
MAKER_17890-RA Phenylpropanoid CAD low borderline
MAKER_18384-RA Phenylpropanoid CAD low borderline
MAKER_19209-RA Phenylpropanoid CAD medium borderline
MAKER_19210-RA Phenylpropanoid CAD medium borderline
MAKER_19211-RA Phenylpropanoid CAD medium borderline
MAKER_19212-RA Phenylpropanoid CAD medium borderline
MAKER_19213-RA Phenylpropanoid CAD medium borderline
MAKER_20230-RA Phenylpropanoid CAD low borderline
MAKER_20584-RA Phenylpropanoid CAD medium pass
MAKER_24158-RA Phenylpropanoid CAD low borderline
MAKER_25484-RA Phenylpropanoid CAD medium borderline
MAKER_25629-RA Phenylpropanoid CAD low borderline
MAKER_30440-RA Phenylpropanoid CAD low borderline
MAKER_35565-RA Phenylpropanoid CAD low borderline
MAKER_00633-RA Phenylpropanoid CCR low borderline
MAKER_01289-RA Phenylpropanoid CCR low borderline
MAKER_13319-RA Phenylpropanoid CCR low borderline
MAKER_19001-RA Phenylpropanoid CCR low borderline
MAKER_21183-RA Phenylpropanoid CCR medium borderline
MAKER_21184-RA Phenylpropanoid CCR medium borderline
MAKER_21884-RA Phenylpropanoid CCR low borderline
MAKER_28183-RA Phenylpropanoid CCR medium pass
MAKER_03938-RA Phenylpropanoid CCoAOMT medium pass
MAKER_14411-RA Phenylpropanoid CCoAOMT medium pass
MAKER_27435-RA Phenylpropanoid CCoAOMT medium pass
MAKER_32805-RA Phenylpropanoid CCoAOMT medium pass
MAKER_32807-RA Phenylpropanoid CCoAOMT medium pass
MAKER_02064-RA Phenylpropanoid COMT medium pass
MAKER_02065-RA Phenylpropanoid COMT medium pass
MAKER_04835-RA Phenylpropanoid COMT low borderline
MAKER_05441-RA Phenylpropanoid COMT medium pass
MAKER_06988-RA Phenylpropanoid COMT medium pass
MAKER_06989-RA Phenylpropanoid COMT medium pass
MAKER_06990-RA Phenylpropanoid COMT low borderline
MAKER_06991-RA Phenylpropanoid COMT medium pass
MAKER_08372-RA Phenylpropanoid COMT medium pass
MAKER_08373-RA Phenylpropanoid COMT medium pass
MAKER_08374-RA Phenylpropanoid COMT medium pass
MAKER_08375-RA Phenylpropanoid COMT medium pass