PlantSME Plant secondary metabolism enzyme database

Atrichum angustatum (atrichum_angustatum)

Imported from atlas release summary for Atrichum angustatum.

627
Candidate Genes
99
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.36% Terpenoid pathway 23.92% Alkaloid pathway 19.94% Rosmarinic acid pathway 12.76% Flavonoid pathway 12.6% Steroid pathway 5.42%
Family Distribution
C4H 7.73% C3'H/CYP98A 6.75% CYP76 5.31% BAHD 4.85% 4CL 4.5% NMT 4.44% POD 4.15% PAL 3.64%
Other Families 58.63%
More Families (91)
IFS 61 3.52% BR6OX2/CYP85A2 48 2.77% T3O 47 2.71% DWF4/CYP90B1 43 2.48% STR 42 2.42% F3H 38 2.19% F3'H/CYP75B 37 2.14% IFR 31 1.79% GS 28 1.62% CODM/T6ODM 28 1.62% UGT 27 1.56% UFGT 26 1.5% 7DLGT 25 1.44% T16H 24 1.38% F3'5'H/CYP75A 23 1.33% LAC 23 1.33% PYKS 22 1.27% IO 21 1.21% SGD 20 1.15% SMT1/SMT2/SMT3 18 1.04% CYP71 17 0.98% CHS 16 0.92% H6H 14 0.81% SLS 14 0.81% FNS 14 0.81% TRI/TRII 13 0.75% COMT 13 0.75% CSE 12 0.69% CAD 11 0.63% G8O/G8H 10 0.58% RAS 10 0.58% BR6OX1/CYP85A1 10 0.58% CYP80B1 9 0.52% 7DLH 9 0.52% HCT 9 0.52% MPO 8 0.46% ANR 8 0.46% F5H/CYP84A 8 0.46% CAS 8 0.46% CYP90D1 8 0.46% CPD/CYP90A1 8 0.46% AACT 8 0.46% CNMT 7 0.4% DXS 7 0.4% 8HGO 6 0.35% NCS 6 0.35% BBE 5 0.29% COR 5 0.29% 16OMT 5 0.29% CCR 5 0.29% CPR 5 0.29% ROT3/CYP90C1 5 0.29% GGPPS 5 0.29% PMT 4 0.23% FLS 4 0.23% SQS/FDFT1 4 0.23% DET2 4 0.23% DWF1 4 0.23% TYDC_DDC 3 0.17% CYP719 3 0.17% ADC 3 0.17% CHI 3 0.17% DFR 3 0.17% ANS/LDOX 3 0.17% TAT 3 0.17% SMO1/SMO2 3 0.17% DWF5 3 0.17% FPPS 3 0.17% MVD 3 0.17% ODC 2 0.12% LAMT 2 0.12% TDC 2 0.12% CCoAOMT 2 0.12% SQE 2 0.12% CPI1 2 0.12% MCT/IspD 2 0.12% HMGS 2 0.12% MVK 2 0.12% HMGR 2 0.12% HDR/IspH 2 0.12% HPPR 1 0.06% HYD1 1 0.06% FK 1 0.06% CYP51G1 1 0.06% DWF7 1 0.06% DXR 1 0.06% IDI 1 0.06% HDS/IspG 1 0.06% PMK 1 0.06% CMK/IspE 1 0.06% MDS/IspF 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 159 11 POD (67) View species results
Terpenoid pathway 150 18 BAHD (58) View species results
Alkaloid pathway 125 16 NMT (24) View species results
Rosmarinic acid pathway 80 7 C4H (38) View species results
Flavonoid pathway 79 8 UFGT (25) View species results
Steroid pathway 34 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 749 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 103 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
ANangscaffold_10001270 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
ANangscaffold_10016710 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
ANangscaffold_10050120 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
ANangscaffold_20054140 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
ANangscaffold_20060180 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
ANangscaffold_20060460 Alkaloid TRI/TRII low borderline TRI_TRII__00001__sp_A7DY56_TRN1_COCOF
ANangscaffold_20081100 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
ANangscaffold_30120430 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
ANangscaffold_50173500 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
ANangscaffold_60188140 Alkaloid TRI/TRII low borderline TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
ANangscaffold_60209070 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
ANangscaffold_70230560 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
ANangscaffold_70233880 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB