PlantSME Plant secondary metabolism enzyme database

Bazzania tridens (bazzania_tridens)

Imported from atlas release summary for Bazzania tridens.

679
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 22.97% Alkaloid pathway 22.24% Phenylpropanoid pathway 22.24% Flavonoid pathway 15.02% Rosmarinic acid pathway 11.63% Steroid pathway 5.89%
Family Distribution
C4H 8.47% C3'H/CYP98A 6.05% CYP76 5.52% BAHD 4.94% 4CL 4.65% IFS 3.53% POD 3.29% NMT 3.0%
Other Families 60.55%
More Families (95)
T3O 58 2.81% STR 58 2.81% DWF4/CYP90B1 50 2.42% F3H 49 2.37% IFR 47 2.27% BR6OX2/CYP85A2 47 2.27% UGT 42 2.03% 7DLGT 41 1.98% F3'H/CYP75B 39 1.89% UFGT 38 1.84% H6H 36 1.74% GS 34 1.65% G8O/G8H 34 1.65% TRI/TRII 30 1.45% CAD 27 1.31% IO 26 1.26% T16H 25 1.21% COMT 25 1.21% FNS 21 1.02% F3'5'H/CYP75A 20 0.97% HCT 20 0.97% SMT1/SMT2/SMT3 20 0.97% LAMT 18 0.87% PYKS 18 0.87% PAL 18 0.87% RAS 18 0.87% COR 15 0.73% LAC 15 0.73% BR6OX1/CYP85A1 15 0.73% CYP71 15 0.73% CODM/T6ODM 14 0.68% CNMT 13 0.63% ANR 13 0.63% CHS 13 0.63% CSE 12 0.58% NCS 11 0.53% CYP80B1 11 0.53% F5H/CYP84A 10 0.48% CAS 10 0.48% CPD/CYP90A1 10 0.48% CYP719 9 0.44% PMT 9 0.44% SLS 9 0.44% TPS 9 0.44% 16OMT 8 0.39% DFR 8 0.39% CCR 8 0.39% CYP90D1 8 0.39% AACT 8 0.39% SGD 7 0.34% GGPPS 7 0.34% ANS/LDOX 6 0.29% CPR 6 0.29% TAT 6 0.29% BBE 5 0.24% 8HGO 5 0.24% FLS 5 0.24% CYP51G1 5 0.24% ROT3/CYP90C1 5 0.24% GES 4 0.19% CHI 4 0.19% CCoAOMT 4 0.19% HPPR 4 0.19% DET2 4 0.19% DXS 4 0.19% MVK 4 0.19% 7DLH 3 0.15% ADC 3 0.15% MPO 3 0.15% DWF7 3 0.15% HYD1 3 0.15% SMO1/SMO2 3 0.15% SQS/FDFT1 3 0.15% MVD 3 0.15% FPPS 3 0.15% PMK 3 0.15% TDC 2 0.1% 6OMT_4OMT_SOMT 2 0.1% DWF1 2 0.1% CPI1 2 0.1% CMK/IspE 2 0.1% CYP80F1 1 0.05% TYDC_DDC 1 0.05% ISY 1 0.05% SQE 1 0.05% DWF5 1 0.05% FK 1 0.05% DXR 1 0.05% IDI 1 0.05% MCT/IspD 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGS 1 0.05% HDR/IspH 1 0.05% HMGR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 156 19 BAHD (57) View species results
Alkaloid pathway 151 18 T3O (24) View species results
Phenylpropanoid pathway 151 12 POD (59) View species results
Flavonoid pathway 102 11 UFGT (36) View species results
Rosmarinic acid pathway 79 7 C4H (43) View species results
Steroid pathway 40 14 SMT1/SMT2/SMT3 (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 887 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 140 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
Reset
Gene Pathway Family Confidence Status Best Target
Btri1235510039600 Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
Btri1269170088540 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Btri1277200120060 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Btri1283260162200 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Btri1284000168340 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Btri1285350184450 Phenylpropanoid CCR low borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Btri1286630196710 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
Btri880830245120 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ