PlantSME Plant secondary metabolism enzyme database

Beta patula (beta_patula)

Imported from atlas release summary for Beta patula.

1186
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.35% Alkaloid pathway 22.6% Phenylpropanoid pathway 22.6% Flavonoid pathway 13.15% Steroid pathway 5.82% Rosmarinic acid pathway 5.48%
Family Distribution
C4H 7.57% BAHD 6.39% POD 5.36% UGT 4.52% C3'H/CYP98A 4.22% 7DLGT 4.15% UFGT 4.15% CYP76 4.08%
Other Families 59.55%
More Families (96)
4CL 100 3.67% F3H 87 3.2% NMT 86 3.16% IFS 64 2.35% G8O/G8H 60 2.2% CODM/T6ODM 54 1.98% F3'H/CYP75B 52 1.91% SMT1/SMT2/SMT3 50 1.84% STR 45 1.65% DWF4/CYP90B1 40 1.47% H6H 39 1.43% TRI/TRII 38 1.4% T3O 36 1.32% CAD 36 1.32% FNS 34 1.25% PYKS 31 1.14% TPS 30 1.1% COMT 28 1.03% BR6OX2/CYP85A2 28 1.03% SLS 25 0.92% T16H 25 0.92% LAC 25 0.92% RAS 25 0.92% GES 24 0.88% HCT 24 0.88% SGD 23 0.84% IFR 22 0.81% CSE 22 0.81% PMT 21 0.77% F3'5'H/CYP75A 21 0.77% CYP71 21 0.77% ANR 20 0.73% 16OMT 19 0.7% CAS 18 0.66% 7DLH 16 0.59% GS 16 0.59% BBE 15 0.55% CCR 14 0.51% 8HGO 13 0.48% CHS 12 0.44% SQS/FDFT1 12 0.44% CYP90D1 12 0.44% CNMT 11 0.4% F5H/CYP84A 11 0.4% TAT 10 0.37% MPO 9 0.33% LAMT 9 0.33% BR6OX1/CYP85A1 9 0.33% FPPS 9 0.33% IO 8 0.29% NCS 8 0.29% DFR 8 0.29% ANS/LDOX 7 0.26% CPD/CYP90A1 7 0.26% ROT3/CYP90C1 7 0.26% TYDC_DDC 6 0.22% COR 6 0.22% CYP80B1 6 0.22% CCoAOMT 6 0.22% CPR 6 0.22% AACT 6 0.22% ISY 5 0.18% CHI 5 0.18% HPPR 5 0.18% DET2 5 0.18% CYP719 4 0.15% 6OMT_4OMT_SOMT 4 0.15% CYP51G1 4 0.15% HYD1 4 0.15% DXS 4 0.15% GGPPS 4 0.15% PAL 3 0.11% SQE 3 0.11% SMO1/SMO2 3 0.11% DWF7 3 0.11% MVD 3 0.11% MCT/IspD 3 0.11% CYP80F1 2 0.07% TDC 2 0.07% ADC 2 0.07% FLS 2 0.07% MDS/IspF 2 0.07% PMK 2 0.07% IDI 2 0.07% MVK 2 0.07% XMT_MXMT_DXMT 1 0.04% DWF1 1 0.04% CPI1 1 0.04% DWF5 1 0.04% FK 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% HDS/IspG 1 0.04% HMGR 1 0.04% HMGS 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 360 19 BAHD (130) View species results
Alkaloid pathway 268 21 7DLGT (56) View species results
Phenylpropanoid pathway 268 12 POD (142) View species results
Flavonoid pathway 156 9 UFGT (106) View species results
Steroid pathway 69 11 SMT1/SMT2/SMT3 (28) View species results
Rosmarinic acid pathway 65 7 4CL (24) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 890 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status Best Target
Bpatpat_scaffold20680110070.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
Bpatpat_scaffold28500156880.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Bpatpat_scaffold6030232310.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00007__sp_Q9LEL6_6OMT_COPJA
Bpatpat_scaffold9890272080.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP