Beta patula (beta_patula)
Imported from atlas release summary for Beta patula.
1186
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1186
Candidate Genes
C4H
7.57%
BAHD
6.39%
POD
5.36%
UGT
4.52%
C3'H/CYP98A
4.22%
7DLGT
4.15%
UFGT
4.15%
CYP76
4.08%
Other Families
59.55%
More Families (96)
4CL
100
3.67%
F3H
87
3.2%
NMT
86
3.16%
IFS
64
2.35%
G8O/G8H
60
2.2%
CODM/T6ODM
54
1.98%
F3'H/CYP75B
52
1.91%
SMT1/SMT2/SMT3
50
1.84%
STR
45
1.65%
DWF4/CYP90B1
40
1.47%
H6H
39
1.43%
TRI/TRII
38
1.4%
T3O
36
1.32%
CAD
36
1.32%
FNS
34
1.25%
PYKS
31
1.14%
TPS
30
1.1%
COMT
28
1.03%
BR6OX2/CYP85A2
28
1.03%
SLS
25
0.92%
T16H
25
0.92%
LAC
25
0.92%
RAS
25
0.92%
GES
24
0.88%
HCT
24
0.88%
SGD
23
0.84%
IFR
22
0.81%
CSE
22
0.81%
PMT
21
0.77%
F3'5'H/CYP75A
21
0.77%
CYP71
21
0.77%
ANR
20
0.73%
16OMT
19
0.7%
CAS
18
0.66%
7DLH
16
0.59%
GS
16
0.59%
BBE
15
0.55%
CCR
14
0.51%
8HGO
13
0.48%
CHS
12
0.44%
SQS/FDFT1
12
0.44%
CYP90D1
12
0.44%
CNMT
11
0.4%
F5H/CYP84A
11
0.4%
TAT
10
0.37%
MPO
9
0.33%
LAMT
9
0.33%
BR6OX1/CYP85A1
9
0.33%
FPPS
9
0.33%
IO
8
0.29%
NCS
8
0.29%
DFR
8
0.29%
ANS/LDOX
7
0.26%
CPD/CYP90A1
7
0.26%
ROT3/CYP90C1
7
0.26%
TYDC_DDC
6
0.22%
COR
6
0.22%
CYP80B1
6
0.22%
CCoAOMT
6
0.22%
CPR
6
0.22%
AACT
6
0.22%
ISY
5
0.18%
CHI
5
0.18%
HPPR
5
0.18%
DET2
5
0.18%
CYP719
4
0.15%
6OMT_4OMT_SOMT
4
0.15%
CYP51G1
4
0.15%
HYD1
4
0.15%
DXS
4
0.15%
GGPPS
4
0.15%
PAL
3
0.11%
SQE
3
0.11%
SMO1/SMO2
3
0.11%
DWF7
3
0.11%
MVD
3
0.11%
MCT/IspD
3
0.11%
CYP80F1
2
0.07%
TDC
2
0.07%
ADC
2
0.07%
FLS
2
0.07%
MDS/IspF
2
0.07%
PMK
2
0.07%
IDI
2
0.07%
MVK
2
0.07%
XMT_MXMT_DXMT
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
FK
1
0.04%
HDR/IspH
1
0.04%
DXR
1
0.04%
HDS/IspG
1
0.04%
HMGR
1
0.04%
HMGS
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 360 | 19 | BAHD (130) | View species results |
| Alkaloid pathway | 268 | 21 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 268 | 12 | POD (142) | View species results |
| Flavonoid pathway | 156 | 9 | UFGT (106) | View species results |
| Steroid pathway | 69 | 11 | SMT1/SMT2/SMT3 (28) | View species results |
| Rosmarinic acid pathway | 65 | 7 | 4CL (24) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 890 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 223 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bpatpat_scaffold12920054630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold12970054860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold12970054980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold13470059130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold16800085760.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Bpatpat_scaffold18520096240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold18770097650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold18800097960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold1900099220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold1910100410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold20880111220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold21800116510.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold21940117470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bpatpat_scaffold22010117830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold22550123130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold2290125020.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold22940126100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold23430129070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold23590129550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold25230139290.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bpatpat_scaffold29070159770.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Bpatpat_scaffold300163700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold3040165770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold32000172590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold33520179380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold33520179380.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold3800193940.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bpatpat_scaffold38070194160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold39710197630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold39710197640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold40210199570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold44090207340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold4770212670.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold5030215720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold5720227270.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bpatpat_scaffold5790228170.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bpatpat_scaffold5790228180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bpatpat_scaffold5960230770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold6520237840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold6920241360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold7280243890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold7930252600.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bpatpat_scaffold8230255930.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold8890262810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bpatpat_scaffold9290267500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |