PlantSME Plant secondary metabolism enzyme database

Beta patula (beta_patula)

Imported from atlas release summary for Beta patula.

1186
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.35% Alkaloid pathway 22.6% Phenylpropanoid pathway 22.6% Flavonoid pathway 13.15% Steroid pathway 5.82% Rosmarinic acid pathway 5.48%
Family Distribution
C4H 7.57% BAHD 6.39% POD 5.36% UGT 4.52% C3'H/CYP98A 4.22% 7DLGT 4.15% UFGT 4.15% CYP76 4.08%
Other Families 59.55%
More Families (96)
4CL 100 3.67% F3H 87 3.2% NMT 86 3.16% IFS 64 2.35% G8O/G8H 60 2.2% CODM/T6ODM 54 1.98% F3'H/CYP75B 52 1.91% SMT1/SMT2/SMT3 50 1.84% STR 45 1.65% DWF4/CYP90B1 40 1.47% H6H 39 1.43% TRI/TRII 38 1.4% T3O 36 1.32% CAD 36 1.32% FNS 34 1.25% PYKS 31 1.14% TPS 30 1.1% COMT 28 1.03% BR6OX2/CYP85A2 28 1.03% SLS 25 0.92% T16H 25 0.92% LAC 25 0.92% RAS 25 0.92% GES 24 0.88% HCT 24 0.88% SGD 23 0.84% IFR 22 0.81% CSE 22 0.81% PMT 21 0.77% F3'5'H/CYP75A 21 0.77% CYP71 21 0.77% ANR 20 0.73% 16OMT 19 0.7% CAS 18 0.66% 7DLH 16 0.59% GS 16 0.59% BBE 15 0.55% CCR 14 0.51% 8HGO 13 0.48% CHS 12 0.44% SQS/FDFT1 12 0.44% CYP90D1 12 0.44% CNMT 11 0.4% F5H/CYP84A 11 0.4% TAT 10 0.37% MPO 9 0.33% LAMT 9 0.33% BR6OX1/CYP85A1 9 0.33% FPPS 9 0.33% IO 8 0.29% NCS 8 0.29% DFR 8 0.29% ANS/LDOX 7 0.26% CPD/CYP90A1 7 0.26% ROT3/CYP90C1 7 0.26% TYDC_DDC 6 0.22% COR 6 0.22% CYP80B1 6 0.22% CCoAOMT 6 0.22% CPR 6 0.22% AACT 6 0.22% ISY 5 0.18% CHI 5 0.18% HPPR 5 0.18% DET2 5 0.18% CYP719 4 0.15% 6OMT_4OMT_SOMT 4 0.15% CYP51G1 4 0.15% HYD1 4 0.15% DXS 4 0.15% GGPPS 4 0.15% PAL 3 0.11% SQE 3 0.11% SMO1/SMO2 3 0.11% DWF7 3 0.11% MVD 3 0.11% MCT/IspD 3 0.11% CYP80F1 2 0.07% TDC 2 0.07% ADC 2 0.07% FLS 2 0.07% MDS/IspF 2 0.07% PMK 2 0.07% IDI 2 0.07% MVK 2 0.07% XMT_MXMT_DXMT 1 0.04% DWF1 1 0.04% CPI1 1 0.04% DWF5 1 0.04% FK 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% HDS/IspG 1 0.04% HMGR 1 0.04% HMGS 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 360 19 BAHD (130) View species results
Alkaloid pathway 268 21 7DLGT (56) View species results
Phenylpropanoid pathway 268 12 POD (142) View species results
Flavonoid pathway 156 9 UFGT (106) View species results
Steroid pathway 69 11 SMT1/SMT2/SMT3 (28) View species results
Rosmarinic acid pathway 65 7 4CL (24) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 890 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 223 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
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Gene Pathway Family Confidence Status
Bpatpat_scaffold110036180.1 Alkaloid SGD medium pass
Bpatpat_scaffold130680056080.1 Alkaloid SGD medium pass
Bpatpat_scaffold16800086030.1 Alkaloid SGD medium pass
Bpatpat_scaffold19500102830.1 Alkaloid SGD medium pass
Bpatpat_scaffold20100107010.1 Alkaloid SGD low borderline
Bpatpat_scaffold2230120810.1 Alkaloid SGD medium pass
Bpatpat_scaffold2230120820.1 Alkaloid SGD medium pass
Bpatpat_scaffold2230120830.1 Alkaloid SGD medium pass
Bpatpat_scaffold2230120840.1 Alkaloid SGD medium pass
Bpatpat_scaffold2230120850.1 Alkaloid SGD medium pass
Bpatpat_scaffold22940126110.1 Alkaloid SGD medium pass
Bpatpat_scaffold33900180230.1 Alkaloid SGD medium pass
Bpatpat_scaffold37630192870.1 Alkaloid SGD medium pass
Bpatpat_scaffold37630192870.2 Alkaloid SGD medium pass
Bpatpat_scaffold3850195060.1 Alkaloid SGD medium pass
Bpatpat_scaffold42090203670.1 Alkaloid SGD low borderline
Bpatpat_scaffold5270220750.1 Alkaloid SGD medium pass
Bpatpat_scaffold5270220760.1 Alkaloid SGD medium pass
Bpatpat_scaffold7500248510.1 Alkaloid SGD medium pass
Bpatpat_scaffold7500248510.2 Alkaloid SGD medium pass
Bpatpat_scaffold7500248530.1 Alkaloid SGD medium pass
Bpatpat_scaffold7780251400.1 Alkaloid SGD medium pass
Bpatpat_scaffold9010264380.1 Alkaloid SGD medium pass