Beta patula (beta_patula)
Imported from atlas release summary for Beta patula.
1395
Candidate Protein Records
1186
Pathway-Level Records
2722
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2722
Family-Level Calls
C4H
7.57%
BAHD
6.39%
POD
5.36%
UGT
4.52%
C3'H/CYP98A
4.22%
7DLGT
4.15%
UFGT
4.15%
CYP76
4.08%
Other Families
59.55%
More Families (96)
4CL
100
3.67%
F3H
87
3.2%
NMT
86
3.16%
IFS
64
2.35%
G8O/G8H
60
2.2%
CODM/T6ODM
54
1.98%
F3'H/CYP75B
52
1.91%
SMT1/SMT2/SMT3
50
1.84%
STR
45
1.65%
DWF4/CYP90B1
40
1.47%
H6H
39
1.43%
TRI/TRII
38
1.4%
T3O
36
1.32%
CAD
36
1.32%
FNS
34
1.25%
PYKS
31
1.14%
TPS
30
1.1%
COMT
28
1.03%
BR6OX2/CYP85A2
28
1.03%
SLS
25
0.92%
T16H
25
0.92%
LAC
25
0.92%
RAS
25
0.92%
GES
24
0.88%
HCT
24
0.88%
SGD
23
0.84%
IFR
22
0.81%
CSE
22
0.81%
PMT
21
0.77%
F3'5'H/CYP75A
21
0.77%
CYP71
21
0.77%
ANR
20
0.73%
16OMT
19
0.7%
CAS
18
0.66%
7DLH
16
0.59%
GS
16
0.59%
BBE
15
0.55%
CCR
14
0.51%
8HGO
13
0.48%
CHS
12
0.44%
SQS/FDFT1
12
0.44%
CYP90D1
12
0.44%
CNMT
11
0.4%
F5H/CYP84A
11
0.4%
TAT
10
0.37%
MPO
9
0.33%
LAMT
9
0.33%
BR6OX1/CYP85A1
9
0.33%
FPPS
9
0.33%
IO
8
0.29%
NCS
8
0.29%
DFR
8
0.29%
ANS/LDOX
7
0.26%
CPD/CYP90A1
7
0.26%
ROT3/CYP90C1
7
0.26%
TYDC_DDC
6
0.22%
COR
6
0.22%
CYP80B1
6
0.22%
CCoAOMT
6
0.22%
CPR
6
0.22%
AACT
6
0.22%
ISY
5
0.18%
CHI
5
0.18%
HPPR
5
0.18%
DET2
5
0.18%
CYP719
4
0.15%
6OMT_4OMT_SOMT
4
0.15%
CYP51G1
4
0.15%
HYD1
4
0.15%
DXS
4
0.15%
GGPPS
4
0.15%
PAL
3
0.11%
SQE
3
0.11%
SMO1/SMO2
3
0.11%
DWF7
3
0.11%
MVD
3
0.11%
MCT/IspD
3
0.11%
CYP80F1
2
0.07%
TDC
2
0.07%
ADC
2
0.07%
FLS
2
0.07%
MDS/IspF
2
0.07%
PMK
2
0.07%
IDI
2
0.07%
MVK
2
0.07%
XMT_MXMT_DXMT
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
FK
1
0.04%
HDR/IspH
1
0.04%
DXR
1
0.04%
HDS/IspG
1
0.04%
HMGR
1
0.04%
HMGS
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 360 | 19 | BAHD (130) | View species results |
| Alkaloid pathway | 268 | 21 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 268 | 12 | POD (142) | View species results |
| Flavonoid pathway | 156 | 9 | UFGT (106) | View species results |
| Steroid pathway | 69 | 11 | SMT1/SMT2/SMT3 (28) | View species results |
| Rosmarinic acid pathway | 65 | 7 | 4CL (24) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 890 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 223 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Bpatpat_scaffold32110173100.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold34200181450.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold3490183760.1 | Alkaloid | NMT | medium | borderline |
| Bpatpat_scaffold3730191800.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold3730191820.1 | Alkaloid | NMT | medium | borderline |
| Bpatpat_scaffold39020196470.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold440207040.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold5140217910.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold5210218410.1 | Alkaloid | NMT | medium | borderline |
| Bpatpat_scaffold5260220560.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold53620222010.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold5620224790.1 | Alkaloid | NMT | medium | borderline |
| Bpatpat_scaffold5650225700.1 | Alkaloid | NMT | medium | borderline |
| Bpatpat_scaffold5720227020.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold5720227250.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold6100233340.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold6350235710.1 | Alkaloid | NMT | medium | borderline |
| Bpatpat_scaffold6450236900.1 | Alkaloid | NMT | medium | borderline |
| Bpatpat_scaffold6510237720.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold7450246790.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold7480247710.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold7480247800.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold760249350.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold7760251200.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold7770251270.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold8400257040.1 | Alkaloid | NMT | low | borderline |
| Bpatpat_scaffold8550259120.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold8740261230.1 | Alkaloid | NMT | medium | borderline |
| Bpatpat_scaffold940268110.1 | Alkaloid | NMT | medium | pass |
| Bpatpat_scaffold11140037690.1 | Alkaloid | PMT | medium | borderline |
| Bpatpat_scaffold11160037920.1 | Alkaloid | PMT | medium | pass |
| Bpatpat_scaffold11650042640.1 | Alkaloid | PMT | medium | pass |
| Bpatpat_scaffold19540103080.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold20170107340.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold20170107350.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold21530115420.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold23940132400.1 | Alkaloid | PMT | medium | pass |
| Bpatpat_scaffold25310139770.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold25450140590.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold25820143100.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold26720147920.1 | Alkaloid | PMT | medium | pass |
| Bpatpat_scaffold26720147930.1 | Alkaloid | PMT | medium | pass |
| Bpatpat_scaffold29210160150.1 | Alkaloid | PMT | medium | pass |
| Bpatpat_scaffold32100173030.1 | Alkaloid | PMT | medium | borderline |
| Bpatpat_scaffold4010198500.1 | Alkaloid | PMT | medium | pass |
| Bpatpat_scaffold4030199870.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold5720227140.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold640236450.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold790252290.1 | Alkaloid | PMT | low | borderline |
| Bpatpat_scaffold9950273300.1 | Alkaloid | PMT | low | borderline |