PlantSME Plant secondary metabolism enzyme database

Betula pendula (betula_pendula)

Imported from atlas release summary for Betula pendula.

1964
Candidate Protein Records
1803
Pathway-Level Records
4293
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.9% Alkaloid pathway 22.02% Phenylpropanoid pathway 19.8% Flavonoid pathway 14.09% Rosmarinic acid pathway 8.6% Steroid pathway 6.6%
Family Distribution
C4H 6.36% C3'H/CYP98A 6.06% UGT 5.05% BAHD 4.71% 7DLGT 4.5% UFGT 4.5% IFS 4.08% CYP76 3.91%
Other Families 60.84%
More Families (97)
POD 148 3.45% T3O 139 3.24% 4CL 123 2.87% DWF4/CYP90B1 104 2.42% F3H 96 2.24% F3'H/CYP75B 92 2.14% CAD 92 2.14% BR6OX2/CYP85A2 79 1.84% TRI/TRII 76 1.77% STR 75 1.75% CAS 71 1.65% NMT 65 1.51% CODM/T6ODM 61 1.42% TPS 60 1.4% GES 56 1.3% CYP71 53 1.23% LAC 51 1.19% SMT1/SMT2/SMT3 50 1.16% CYP90D1 46 1.07% T16H 45 1.05% COMT 44 1.02% GS 41 0.96% H6H 40 0.93% G8O/G8H 39 0.91% BBE 35 0.82% HCT 35 0.82% 7DLH 33 0.77% IFR 33 0.77% RAS 33 0.77% CSE 31 0.72% PAL 30 0.7% 16OMT 29 0.68% SLS 29 0.68% PMT 29 0.68% PYKS 28 0.65% ANR 25 0.58% F5H/CYP84A 25 0.58% TAT 23 0.54% BR6OX1/CYP85A1 23 0.54% IO 22 0.51% FNS 21 0.49% CCR 21 0.49% SGD 20 0.47% COR 20 0.47% NCS 19 0.44% CYP51G1 19 0.44% F3'5'H/CYP75A 18 0.42% CPD/CYP90A1 17 0.4% DFR 16 0.37% 8HGO 12 0.28% ANS/LDOX 11 0.26% CPR 11 0.26% ROT3/CYP90C1 11 0.26% FPPS 11 0.26% TYDC_DDC 10 0.23% MPO 10 0.23% CYP80B1 10 0.23% LAMT 10 0.23% ISY 9 0.21% CCoAOMT 9 0.21% HPPR 8 0.19% AACT 8 0.19% GGPPS 8 0.19% CNMT 7 0.16% CHI 6 0.14% ADC 5 0.12% 6OMT_4OMT_SOMT 5 0.12% CHS 5 0.12% SQS/FDFT1 5 0.12% DXS 5 0.12% MVD 5 0.12% CYP719 4 0.09% DWF1 4 0.09% SQE 4 0.09% DET2 3 0.07% HMGS 3 0.07% HMGR 3 0.07% MCT/IspD 3 0.07% MVK 3 0.07% TDC 2 0.05% FLS 2 0.05% SMO1/SMO2 2 0.05% HYD1 2 0.05% CPI1 2 0.05% DXR 2 0.05% ODC 1 0.02% CYP80F1 1 0.02% XMT_MXMT_DXMT 1 0.02% FK 1 0.02% DWF5 1 0.02% DWF7 1 0.02% IDI 1 0.02% MDS/IspF 1 0.02% PMK 1 0.02% HDR/IspH 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 521 19 UGT (205) View species results
Alkaloid pathway 397 24 7DLGT (95) View species results
Phenylpropanoid pathway 357 12 POD (137) View species results
Flavonoid pathway 254 12 UFGT (181) View species results
Rosmarinic acid pathway 155 7 C4H (72) View species results
Steroid pathway 119 14 CAS (64) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1685 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 270 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Protein/Isoform Record Pathway Family Confidence Status Best Target
BpenContig6710238060.1 Alkaloid GES medium pass GES__00006__sp_Q4JHG3_GRNLC_PERFH
BpenContig6710238070.1 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
BpenContig6710238080.1 Alkaloid GES medium pass GES__00006__sp_Q4JHG3_GRNLC_PERFH
BpenContig920270400.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
BpenContig920270410.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
BpenContig9390272040.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU