PlantSME Plant secondary metabolism enzyme database

Brachypodium distachyon (brachypodium_distachyon)

Imported from atlas release summary for Brachypodium distachyon.

2226
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.0% Phenylpropanoid pathway 23.41% Alkaloid pathway 22.69% Flavonoid pathway 12.4% Rosmarinic acid pathway 7.28% Steroid pathway 7.23%
Family Distribution
4CL 6.6% BAHD 6.12% C3'H/CYP98A 5.47% C4H 5.35% POD 5.02% NMT 4.29% UFGT 3.54% UGT 3.53%
Other Families 60.08%
More Families (98)
7DLGT 188 3.51% IFS 166 3.1% T3O 151 2.82% CYP76 151 2.82% STR 141 2.63% DWF4/CYP90B1 124 2.31% F3'H/CYP75B 107 2.0% F3H 104 1.94% SMT1/SMT2/SMT3 99 1.85% CYP71 90 1.68% LAC 82 1.53% CAS 78 1.45% SGD 76 1.42% BR6OX2/CYP85A2 76 1.42% CAD 71 1.32% CODM/T6ODM 62 1.16% PAL 60 1.12% SLS 55 1.03% IFR 53 0.99% TRI/TRII 52 0.97% CSE 52 0.97% CYP51G1 50 0.93% RAS 47 0.88% FNS 46 0.86% PYKS 45 0.84% PMT 41 0.76% H6H 41 0.76% CYP90D1 39 0.73% GS 37 0.69% TPS 36 0.67% GES 35 0.65% CCR 35 0.65% G8O/G8H 34 0.63% HCT 31 0.58% ANR 29 0.54% IO 28 0.52% T16H 28 0.52% COMT 28 0.52% 7DLH 26 0.48% BR6OX1/CYP85A1 23 0.43% 8HGO 21 0.39% DFR 21 0.39% HDS/IspG 21 0.39% 16OMT 20 0.37% F3'5'H/CYP75A 20 0.37% CPD/CYP90A1 20 0.37% MPO 19 0.35% NCS 16 0.3% F5H/CYP84A 16 0.3% TAT 16 0.3% CYP80B1 15 0.28% CHS 15 0.28% BBE 14 0.26% COR 14 0.26% TYDC_DDC 13 0.24% CPR 12 0.22% FPPS 12 0.22% LAMT 11 0.21% CHI 11 0.21% CCoAOMT 11 0.21% SMO1/SMO2 11 0.21% MVD 11 0.21% DXS 11 0.21% CNMT 10 0.19% HPPR 10 0.19% SQS/FDFT1 10 0.19% DWF1 9 0.17% CYP719 8 0.15% TDC 8 0.15% AACT 8 0.15% GGPPS 7 0.13% ANS/LDOX 6 0.11% ROT3/CYP90C1 6 0.11% MVK 6 0.11% PMK 6 0.11% IDI 5 0.09% SQE 4 0.07% HYD1 4 0.07% HMGS 4 0.07% MCT/IspD 4 0.07% 6OMT_4OMT_SOMT 3 0.06% CYP80F1 3 0.06% ADC 3 0.06% ODC 3 0.06% DWF5 3 0.06% DXR 3 0.06% MDS/IspF 3 0.06% HMGR 3 0.06% XMT_MXMT_DXMT 2 0.04% FLS 2 0.04% DET2 2 0.04% CMK/IspE 2 0.04% ISY 1 0.02% DWF7 1 0.02% CPI1 1 0.02% FK 1 0.02% GPPS 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 601 19 BAHD (251) View species results
Phenylpropanoid pathway 521 11 POD (255) View species results
Alkaloid pathway 505 20 NMT (102) View species results
Flavonoid pathway 276 11 UFGT (183) View species results
Rosmarinic acid pathway 162 7 C4H (56) View species results
Steroid pathway 161 12 SMT1/SMT2/SMT3 (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1816 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 406 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GGPPS
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Gene Pathway Family Confidence Status Best Target
Bdis01G0006280.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Bdis01G0028000.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Bdis01G0039270.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Bdis02G0010620.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Bdis02G0018520.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Bdis03G0059720.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Bdis04G0046970.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH