Brachypodium distachyon (brachypodium_distachyon)
Imported from atlas release summary for Brachypodium distachyon.
2226
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2226
Candidate Genes
4CL
6.6%
BAHD
6.12%
C3'H/CYP98A
5.47%
C4H
5.35%
POD
5.02%
NMT
4.29%
UFGT
3.54%
UGT
3.53%
Other Families
60.08%
More Families (98)
7DLGT
188
3.51%
IFS
166
3.1%
T3O
151
2.82%
CYP76
151
2.82%
STR
141
2.63%
DWF4/CYP90B1
124
2.31%
F3'H/CYP75B
107
2.0%
F3H
104
1.94%
SMT1/SMT2/SMT3
99
1.85%
CYP71
90
1.68%
LAC
82
1.53%
CAS
78
1.45%
SGD
76
1.42%
BR6OX2/CYP85A2
76
1.42%
CAD
71
1.32%
CODM/T6ODM
62
1.16%
PAL
60
1.12%
SLS
55
1.03%
IFR
53
0.99%
TRI/TRII
52
0.97%
CSE
52
0.97%
CYP51G1
50
0.93%
RAS
47
0.88%
FNS
46
0.86%
PYKS
45
0.84%
PMT
41
0.76%
H6H
41
0.76%
CYP90D1
39
0.73%
GS
37
0.69%
TPS
36
0.67%
GES
35
0.65%
CCR
35
0.65%
G8O/G8H
34
0.63%
HCT
31
0.58%
ANR
29
0.54%
IO
28
0.52%
T16H
28
0.52%
COMT
28
0.52%
7DLH
26
0.48%
BR6OX1/CYP85A1
23
0.43%
8HGO
21
0.39%
DFR
21
0.39%
HDS/IspG
21
0.39%
16OMT
20
0.37%
F3'5'H/CYP75A
20
0.37%
CPD/CYP90A1
20
0.37%
MPO
19
0.35%
NCS
16
0.3%
F5H/CYP84A
16
0.3%
TAT
16
0.3%
CYP80B1
15
0.28%
CHS
15
0.28%
BBE
14
0.26%
COR
14
0.26%
TYDC_DDC
13
0.24%
CPR
12
0.22%
FPPS
12
0.22%
LAMT
11
0.21%
CHI
11
0.21%
CCoAOMT
11
0.21%
SMO1/SMO2
11
0.21%
MVD
11
0.21%
DXS
11
0.21%
CNMT
10
0.19%
HPPR
10
0.19%
SQS/FDFT1
10
0.19%
DWF1
9
0.17%
CYP719
8
0.15%
TDC
8
0.15%
AACT
8
0.15%
GGPPS
7
0.13%
ANS/LDOX
6
0.11%
ROT3/CYP90C1
6
0.11%
MVK
6
0.11%
PMK
6
0.11%
IDI
5
0.09%
SQE
4
0.07%
HYD1
4
0.07%
HMGS
4
0.07%
MCT/IspD
4
0.07%
6OMT_4OMT_SOMT
3
0.06%
CYP80F1
3
0.06%
ADC
3
0.06%
ODC
3
0.06%
DWF5
3
0.06%
DXR
3
0.06%
MDS/IspF
3
0.06%
HMGR
3
0.06%
XMT_MXMT_DXMT
2
0.04%
FLS
2
0.04%
DET2
2
0.04%
CMK/IspE
2
0.04%
ISY
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
GPPS
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 601 | 19 | BAHD (251) | View species results |
| Phenylpropanoid pathway | 521 | 11 | POD (255) | View species results |
| Alkaloid pathway | 505 | 20 | NMT (102) | View species results |
| Flavonoid pathway | 276 | 11 | UFGT (183) | View species results |
| Rosmarinic acid pathway | 162 | 7 | C4H (56) | View species results |
| Steroid pathway | 161 | 12 | SMT1/SMT2/SMT3 (67) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1816 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 406 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bdis01G0003300.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis01G0005220.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis01G0005220.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis01G0010600.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis01G0016150.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Bdis01G0020570.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis01G0021750.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis01G0022160.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis01G0027160.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bdis01G0039520.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis01G0055570.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Bdis01G0055590.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Bdis01G0067480.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Bdis01G0077980.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bdis01G0080300.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Bdis01G0080310.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Bdis01G0080330.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Bdis02G0009040.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Bdis02G0038700.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Bdis02G0041010.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis02G0068330.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Bdis03G0025000.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Bdis03G0050890.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Bdis04G0011350.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Bdis04G0014590.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Bdis04G0014600.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Bdis04G0014610.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bdis04G0014620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Bdis04G0014630.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bdis04G0014640.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Bdis04G0022270.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis04G0024130.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Bdis04G0024130.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Bdis04G0024130.4 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Bdis04G0038320.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bdis04G0038320.2 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bdis04G0038330.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Bdis04G0047380.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Bdis04G0047380.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Bdis04G0047380.3 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Bdis04G0048760.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bdis04G0048760.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bdis05G0006710.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Bdis05G0008580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bdis05G0010960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bdis05G0012510.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Bdis05G0014620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Bdis05G0014630.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis05G0014630.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Bdis05G0018100.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |