PlantSME Plant secondary metabolism enzyme database

Brachythecium laetum (brachythecium_laetum)

Imported from atlas release summary for Brachythecium laetum.

668
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.1% Terpenoid pathway 25.6% Alkaloid pathway 18.71% Flavonoid pathway 13.17% Rosmarinic acid pathway 8.83% Steroid pathway 6.59%
Family Distribution
C4H 6.88% POD 5.73% C3'H/CYP98A 5.44% BAHD 5.21% CYP76 4.36% 4CL 4.13% NMT 3.84% F3H 2.46%
Other Families 61.95%
More Families (95)
IFS 42 2.41% F3'H/CYP75B 42 2.41% BR6OX2/CYP85A2 39 2.23% STR 37 2.12% DWF4/CYP90B1 37 2.12% UGT 37 2.12% 7DLGT 36 2.06% GS 36 2.06% PAL 36 2.06% T3O 35 2.01% UFGT 34 1.95% IFR 33 1.89% PYKS 29 1.66% COMT 27 1.55% IO 26 1.49% H6H 23 1.32% G8O/G8H 21 1.2% CHS 21 1.2% CODM/T6ODM 20 1.15% CAD 20 1.15% SMT1/SMT2/SMT3 20 1.15% CYP71 20 1.15% TRI/TRII 19 1.09% CAS 19 1.09% F3'5'H/CYP75A 18 1.03% CSE 18 1.03% SLS 15 0.86% 16OMT 15 0.86% LAMT 14 0.8% NCS 14 0.8% LAC 11 0.63% HCT 11 0.63% SGD 9 0.52% CYP80B1 9 0.52% BBE 9 0.52% T16H 9 0.52% RAS 9 0.52% CPD/CYP90A1 9 0.52% CYP90D1 9 0.52% 8HGO 8 0.46% BR6OX1/CYP85A1 8 0.46% COR 7 0.4% PMT 7 0.4% ANR 7 0.4% FNS 7 0.4% F5H/CYP84A 7 0.4% CCR 7 0.4% CPR 7 0.4% MPO 6 0.34% 7DLH 6 0.34% SQS/FDFT1 6 0.34% TPS 6 0.34% GGPPS 6 0.34% CNMT 5 0.29% DFR 5 0.29% AACT 5 0.29% TYDC_DDC 4 0.23% TDC 4 0.23% CHI 4 0.23% TAT 4 0.23% ROT3/CYP90C1 4 0.23% DWF5 4 0.23% DET2 4 0.23% MVK 4 0.23% 6OMT_4OMT_SOMT 3 0.17% GES 3 0.17% SQE 3 0.17% MVD 3 0.17% HDS/IspG 3 0.17% ISY 2 0.11% ADC 2 0.11% ANS/LDOX 2 0.11% FLS 2 0.11% CCoAOMT 2 0.11% SMO1/SMO2 2 0.11% IDI 2 0.11% MCT/IspD 2 0.11% FPPS 2 0.11% HDR/IspH 2 0.11% CYP719 1 0.06% XMT_MXMT_DXMT 1 0.06% HPPR 1 0.06% FK 1 0.06% DWF7 1 0.06% CYP51G1 1 0.06% DWF1 1 0.06% CPI1 1 0.06% HYD1 1 0.06% HMGS 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% DXS 1 0.06% MDS/IspF 1 0.06% DXR 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 181 10 POD (91) View species results
Terpenoid pathway 171 19 BAHD (63) View species results
Alkaloid pathway 125 17 NMT (27) View species results
Flavonoid pathway 88 9 UFGT (32) View species results
Rosmarinic acid pathway 59 7 C4H (24) View species results
Steroid pathway 44 13 CAS (19) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 649 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Blae2053390025910 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2053480025920 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Blae2111490044500 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Blae2124160058610 Flavonoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Blae2132940078970 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Blae2136410089150 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2138380099080 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Blae2139770106360 Flavonoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Blae2141520114390 Flavonoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Blae2142180117880 Flavonoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Blae2143250124500 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2143730127080 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Blae2143760127470 Flavonoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Blae2143780127780 Flavonoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Blae2146000140950 Flavonoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Blae2146340143670 Flavonoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Blae2146340143730 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Blae2150570170690 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Blae2153610189760 Flavonoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Blae2154760199240 Flavonoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Blae2156870211930 Flavonoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Blae2158140221000 Flavonoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Blae2159130230300 Flavonoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2163600261680 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Blae2053390025910 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2053480025920 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Blae2111490044500 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Blae2124160058610 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Blae2132940078970 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Blae2136410089150 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2138380099080 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Blae2139770106360 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Blae2141520114390 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Blae2142180117880 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
Blae2143250124500 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2143730127080 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Blae2143760127470 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Blae2143780127780 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Blae2146000140950 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Blae2146340143670 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Blae2146340143730 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Blae2150570170690 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Blae2153610189760 Phenylpropanoid 4CL low borderline 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Blae2154760199240 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Blae2156870211930 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Blae2158140221000 Phenylpropanoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
Blae2159130230300 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2163600261680 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Blae2053390025910 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Blae2053480025920 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH