Brachythecium laetum (brachythecium_laetum)
Imported from atlas release summary for Brachythecium laetum.
668
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
668
Candidate Genes
C4H
6.88%
POD
5.73%
C3'H/CYP98A
5.44%
BAHD
5.21%
CYP76
4.36%
4CL
4.13%
NMT
3.84%
F3H
2.46%
Other Families
61.95%
More Families (95)
IFS
42
2.41%
F3'H/CYP75B
42
2.41%
BR6OX2/CYP85A2
39
2.23%
STR
37
2.12%
DWF4/CYP90B1
37
2.12%
UGT
37
2.12%
7DLGT
36
2.06%
GS
36
2.06%
PAL
36
2.06%
T3O
35
2.01%
UFGT
34
1.95%
IFR
33
1.89%
PYKS
29
1.66%
COMT
27
1.55%
IO
26
1.49%
H6H
23
1.32%
G8O/G8H
21
1.2%
CHS
21
1.2%
CODM/T6ODM
20
1.15%
CAD
20
1.15%
SMT1/SMT2/SMT3
20
1.15%
CYP71
20
1.15%
TRI/TRII
19
1.09%
CAS
19
1.09%
F3'5'H/CYP75A
18
1.03%
CSE
18
1.03%
SLS
15
0.86%
16OMT
15
0.86%
LAMT
14
0.8%
NCS
14
0.8%
LAC
11
0.63%
HCT
11
0.63%
SGD
9
0.52%
CYP80B1
9
0.52%
BBE
9
0.52%
T16H
9
0.52%
RAS
9
0.52%
CPD/CYP90A1
9
0.52%
CYP90D1
9
0.52%
8HGO
8
0.46%
BR6OX1/CYP85A1
8
0.46%
COR
7
0.4%
PMT
7
0.4%
ANR
7
0.4%
FNS
7
0.4%
F5H/CYP84A
7
0.4%
CCR
7
0.4%
CPR
7
0.4%
MPO
6
0.34%
7DLH
6
0.34%
SQS/FDFT1
6
0.34%
TPS
6
0.34%
GGPPS
6
0.34%
CNMT
5
0.29%
DFR
5
0.29%
AACT
5
0.29%
TYDC_DDC
4
0.23%
TDC
4
0.23%
CHI
4
0.23%
TAT
4
0.23%
ROT3/CYP90C1
4
0.23%
DWF5
4
0.23%
DET2
4
0.23%
MVK
4
0.23%
6OMT_4OMT_SOMT
3
0.17%
GES
3
0.17%
SQE
3
0.17%
MVD
3
0.17%
HDS/IspG
3
0.17%
ISY
2
0.11%
ADC
2
0.11%
ANS/LDOX
2
0.11%
FLS
2
0.11%
CCoAOMT
2
0.11%
SMO1/SMO2
2
0.11%
IDI
2
0.11%
MCT/IspD
2
0.11%
FPPS
2
0.11%
HDR/IspH
2
0.11%
CYP719
1
0.06%
XMT_MXMT_DXMT
1
0.06%
HPPR
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
CYP51G1
1
0.06%
DWF1
1
0.06%
CPI1
1
0.06%
HYD1
1
0.06%
HMGS
1
0.06%
CMK/IspE
1
0.06%
HMGR
1
0.06%
DXS
1
0.06%
MDS/IspF
1
0.06%
DXR
1
0.06%
PMK
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 181 | 10 | POD (91) | View species results |
| Terpenoid pathway | 171 | 19 | BAHD (63) | View species results |
| Alkaloid pathway | 125 | 17 | NMT (27) | View species results |
| Flavonoid pathway | 88 | 9 | UFGT (32) | View species results |
| Rosmarinic acid pathway | 59 | 7 | C4H (24) | View species results |
| Steroid pathway | 44 | 13 | CAS (19) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 649 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 111 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Blae1360002330 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Blae1360002720 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Blae2111270044340 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Blae2117500049180 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Blae2127900065950 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Blae2136480089420 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Blae2138880101430 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Blae2138900101460 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Blae2145440137470 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Blae2149620160750 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Blae2149620160760 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Blae2153300187650 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Blae2153300187670 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Blae2153880192090 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Blae2153880192140 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Blae2155300202630 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Blae2155300202650 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Blae2155840205920 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Blae2160920246060 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |