PlantSME Plant secondary metabolism enzyme database

Brassica oleracea (brassica_oleracea)

Imported from atlas release summary for Brassica oleracea.

2262
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.39% Alkaloid pathway 21.62% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.58% Rosmarinic acid pathway 8.0% Steroid pathway 6.41%
Family Distribution
C4H 6.18% BAHD 6.15% C3'H/CYP98A 6.1% CYP76 4.05% IFS 3.88% POD 3.81% 4CL 3.41% UGT 3.39%
Other Families 63.03%
More Families (97)
UFGT 179 3.08% 7DLGT 173 2.98% T3O 170 2.93% F3H 167 2.88% DWF4/CYP90B1 153 2.64% NMT 145 2.5% BR6OX2/CYP85A2 120 2.07% F3'H/CYP75B 103 1.77% CODM/T6ODM 101 1.74% H6H 97 1.67% STR 92 1.58% SGD 92 1.58% CYP71 87 1.5% SMT1/SMT2/SMT3 86 1.48% TRI/TRII 74 1.27% CSE 70 1.21% COMT 62 1.07% SLS 60 1.03% T16H 60 1.03% CAD 60 1.03% TPS 60 1.03% CAS 56 0.96% G8O/G8H 52 0.9% PYKS 52 0.9% BBE 50 0.86% LAC 48 0.83% F3'5'H/CYP75A 47 0.81% GES 45 0.78% FNS 45 0.78% IO 44 0.76% IFR 44 0.76% F5H/CYP84A 42 0.72% CYP90D1 41 0.71% HMGR 40 0.69% RAS 38 0.65% TAT 36 0.62% 16OMT 35 0.6% GS 31 0.53% ANR 31 0.53% LAMT 30 0.52% PAL 30 0.52% CPD/CYP90A1 29 0.5% 7DLH 28 0.48% ANS/LDOX 28 0.48% CCR 28 0.48% HCT 27 0.47% CCoAOMT 26 0.45% CYP51G1 25 0.43% BR6OX1/CYP85A1 22 0.38% 8HGO 21 0.36% GGPPS 21 0.36% NCS 18 0.31% CPR 18 0.31% FPPS 17 0.29% PMT 16 0.28% SQE 16 0.28% COR 15 0.26% DFR 15 0.26% CNMT 14 0.24% MPO 14 0.24% CYP80B1 12 0.21% FLS 10 0.17% CHS 10 0.17% ROT3/CYP90C1 10 0.17% AACT 10 0.17% CYP719 9 0.16% XMT_MXMT_DXMT 9 0.16% CYP80F1 9 0.16% HPPR 9 0.16% SQS/FDFT1 9 0.16% SMO1/SMO2 9 0.16% DWF1 8 0.14% ADC 7 0.12% TYDC_DDC 7 0.12% CHI 7 0.12% DWF7 7 0.12% IDI 7 0.12% MVD 7 0.12% MVK 7 0.12% ISY 6 0.1% TDC 4 0.07% HDR/IspH 4 0.07% DXS 4 0.07% MCT/IspD 4 0.07% DWF5 3 0.05% DET2 3 0.05% DXR 3 0.05% MDS/IspF 3 0.05% 6OMT_4OMT_SOMT 2 0.03% CPI1 2 0.03% HYD1 2 0.03% FK 2 0.03% HMGS 2 0.03% PMK 2 0.03% HDS/IspG 2 0.03% CMK/IspE 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 710 22 BAHD (286) View species results
Alkaloid pathway 489 23 7DLGT (81) View species results
Phenylpropanoid pathway 475 12 POD (207) View species results
Flavonoid pathway 262 13 UFGT (166) View species results
Rosmarinic acid pathway 181 7 C4H (74) View species results
Steroid pathway 145 14 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2296 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 422 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
Bo8g098640.1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Bo8g100000.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bo8g101510.1 Phenylpropanoid CAD medium pass CAD__00017__sp_Q9SJ25_CADH2_ARATH
Bo8g101600.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bo8g111140.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Bo9g006080.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bo9g014620.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bo9g042310.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Bo9g059430.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Bo9g153760.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR