Brassica oleracea (brassica_oleracea)
Imported from atlas release summary for Brassica oleracea.
2262
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2262
Candidate Genes
C4H
6.18%
BAHD
6.15%
C3'H/CYP98A
6.1%
CYP76
4.05%
IFS
3.88%
POD
3.81%
4CL
3.41%
UGT
3.39%
Other Families
63.03%
More Families (97)
UFGT
179
3.08%
7DLGT
173
2.98%
T3O
170
2.93%
F3H
167
2.88%
DWF4/CYP90B1
153
2.64%
NMT
145
2.5%
BR6OX2/CYP85A2
120
2.07%
F3'H/CYP75B
103
1.77%
CODM/T6ODM
101
1.74%
H6H
97
1.67%
STR
92
1.58%
SGD
92
1.58%
CYP71
87
1.5%
SMT1/SMT2/SMT3
86
1.48%
TRI/TRII
74
1.27%
CSE
70
1.21%
COMT
62
1.07%
SLS
60
1.03%
T16H
60
1.03%
CAD
60
1.03%
TPS
60
1.03%
CAS
56
0.96%
G8O/G8H
52
0.9%
PYKS
52
0.9%
BBE
50
0.86%
LAC
48
0.83%
F3'5'H/CYP75A
47
0.81%
GES
45
0.78%
FNS
45
0.78%
IO
44
0.76%
IFR
44
0.76%
F5H/CYP84A
42
0.72%
CYP90D1
41
0.71%
HMGR
40
0.69%
RAS
38
0.65%
TAT
36
0.62%
16OMT
35
0.6%
GS
31
0.53%
ANR
31
0.53%
LAMT
30
0.52%
PAL
30
0.52%
CPD/CYP90A1
29
0.5%
7DLH
28
0.48%
ANS/LDOX
28
0.48%
CCR
28
0.48%
HCT
27
0.47%
CCoAOMT
26
0.45%
CYP51G1
25
0.43%
BR6OX1/CYP85A1
22
0.38%
8HGO
21
0.36%
GGPPS
21
0.36%
NCS
18
0.31%
CPR
18
0.31%
FPPS
17
0.29%
PMT
16
0.28%
SQE
16
0.28%
COR
15
0.26%
DFR
15
0.26%
CNMT
14
0.24%
MPO
14
0.24%
CYP80B1
12
0.21%
FLS
10
0.17%
CHS
10
0.17%
ROT3/CYP90C1
10
0.17%
AACT
10
0.17%
CYP719
9
0.16%
XMT_MXMT_DXMT
9
0.16%
CYP80F1
9
0.16%
HPPR
9
0.16%
SQS/FDFT1
9
0.16%
SMO1/SMO2
9
0.16%
DWF1
8
0.14%
ADC
7
0.12%
TYDC_DDC
7
0.12%
CHI
7
0.12%
DWF7
7
0.12%
IDI
7
0.12%
MVD
7
0.12%
MVK
7
0.12%
ISY
6
0.1%
TDC
4
0.07%
HDR/IspH
4
0.07%
DXS
4
0.07%
MCT/IspD
4
0.07%
DWF5
3
0.05%
DET2
3
0.05%
DXR
3
0.05%
MDS/IspF
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
CPI1
2
0.03%
HYD1
2
0.03%
FK
2
0.03%
HMGS
2
0.03%
PMK
2
0.03%
HDS/IspG
2
0.03%
CMK/IspE
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 710 | 22 | BAHD (286) | View species results |
| Alkaloid pathway | 489 | 23 | 7DLGT (81) | View species results |
| Phenylpropanoid pathway | 475 | 12 | POD (207) | View species results |
| Flavonoid pathway | 262 | 13 | UFGT (166) | View species results |
| Rosmarinic acid pathway | 181 | 7 | C4H (74) | View species results |
| Steroid pathway | 145 | 14 | SMT1/SMT2/SMT3 (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2296 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 422 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQE
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bo01317s020.1 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| Bo11165s010.1 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| Bo1g003440.1 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| Bo2g160650.1 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| Bo2g160680.1 | Steroid | SQE | medium | pass | SQE__00001__sp_B7TWW5_SQE2_PANGI |
| Bo2g160690.1 | Steroid | SQE | medium | pass | SQE__00001__sp_B7TWW5_SQE2_PANGI |
| Bo2g160730.1 | Steroid | SQE | low | borderline | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| Bo2g160740.1 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| Bo4g127140.1 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| Bo4g151100.1 | Steroid | SQE | medium | pass | SQE__00003__sp_O81000_ERG15_ARATH |
| Bo7g097120.1 | Steroid | SQE | medium | pass | SQE__00005__sp_Q9SM02_ERG14_ARATH |
| Bo7g097140.1 | Steroid | SQE | medium | pass | SQE__00001__sp_B7TWW5_SQE2_PANGI |
| Bo8g042040.1 | Steroid | SQE | low | borderline | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| Bo8g102370.1 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |
| Bo8g111040.1 | Steroid | SQE | low | borderline | SQE__00001__sp_B7TWW5_SQE2_PANGI |
| Bo9g013760.1 | Steroid | SQE | medium | pass | SQE__00004__sp_Q8VYH2_ERG16_ARATH |