Brassica oleracea (brassica_oleracea)
Imported from atlas release summary for Brassica oleracea.
2262
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2262
Candidate Genes
C4H
6.18%
BAHD
6.15%
C3'H/CYP98A
6.1%
CYP76
4.05%
IFS
3.88%
POD
3.81%
4CL
3.41%
UGT
3.39%
Other Families
63.03%
More Families (97)
UFGT
179
3.08%
7DLGT
173
2.98%
T3O
170
2.93%
F3H
167
2.88%
DWF4/CYP90B1
153
2.64%
NMT
145
2.5%
BR6OX2/CYP85A2
120
2.07%
F3'H/CYP75B
103
1.77%
CODM/T6ODM
101
1.74%
H6H
97
1.67%
STR
92
1.58%
SGD
92
1.58%
CYP71
87
1.5%
SMT1/SMT2/SMT3
86
1.48%
TRI/TRII
74
1.27%
CSE
70
1.21%
COMT
62
1.07%
SLS
60
1.03%
T16H
60
1.03%
CAD
60
1.03%
TPS
60
1.03%
CAS
56
0.96%
G8O/G8H
52
0.9%
PYKS
52
0.9%
BBE
50
0.86%
LAC
48
0.83%
F3'5'H/CYP75A
47
0.81%
GES
45
0.78%
FNS
45
0.78%
IO
44
0.76%
IFR
44
0.76%
F5H/CYP84A
42
0.72%
CYP90D1
41
0.71%
HMGR
40
0.69%
RAS
38
0.65%
TAT
36
0.62%
16OMT
35
0.6%
GS
31
0.53%
ANR
31
0.53%
LAMT
30
0.52%
PAL
30
0.52%
CPD/CYP90A1
29
0.5%
7DLH
28
0.48%
ANS/LDOX
28
0.48%
CCR
28
0.48%
HCT
27
0.47%
CCoAOMT
26
0.45%
CYP51G1
25
0.43%
BR6OX1/CYP85A1
22
0.38%
8HGO
21
0.36%
GGPPS
21
0.36%
NCS
18
0.31%
CPR
18
0.31%
FPPS
17
0.29%
PMT
16
0.28%
SQE
16
0.28%
COR
15
0.26%
DFR
15
0.26%
CNMT
14
0.24%
MPO
14
0.24%
CYP80B1
12
0.21%
FLS
10
0.17%
CHS
10
0.17%
ROT3/CYP90C1
10
0.17%
AACT
10
0.17%
CYP719
9
0.16%
XMT_MXMT_DXMT
9
0.16%
CYP80F1
9
0.16%
HPPR
9
0.16%
SQS/FDFT1
9
0.16%
SMO1/SMO2
9
0.16%
DWF1
8
0.14%
ADC
7
0.12%
TYDC_DDC
7
0.12%
CHI
7
0.12%
DWF7
7
0.12%
IDI
7
0.12%
MVD
7
0.12%
MVK
7
0.12%
ISY
6
0.1%
TDC
4
0.07%
HDR/IspH
4
0.07%
DXS
4
0.07%
MCT/IspD
4
0.07%
DWF5
3
0.05%
DET2
3
0.05%
DXR
3
0.05%
MDS/IspF
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
CPI1
2
0.03%
HYD1
2
0.03%
FK
2
0.03%
HMGS
2
0.03%
PMK
2
0.03%
HDS/IspG
2
0.03%
CMK/IspE
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 710 | 22 | BAHD (286) | View species results |
| Alkaloid pathway | 489 | 23 | 7DLGT (81) | View species results |
| Phenylpropanoid pathway | 475 | 12 | POD (207) | View species results |
| Flavonoid pathway | 262 | 13 | UFGT (166) | View species results |
| Rosmarinic acid pathway | 181 | 7 | C4H (74) | View species results |
| Steroid pathway | 145 | 14 | SMT1/SMT2/SMT3 (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2296 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 422 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bo00534s230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo00831s090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo00866s010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo00866s020.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo00866s030.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo00866s060.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo00927s010.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo01353s050.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo1g040450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo1g048310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo1g059170.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo1g059180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo1g123550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo1g138520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo2g007260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo2g026740.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo2g047420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo2g075160.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo2g080870.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Bo2g134070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo2g138520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g017240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g021180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g030080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g035530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo3g035540.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo3g035550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo3g035760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g039870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo3g087160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g013140.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g013150.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g026540.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g030690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g030700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g030940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g107870.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g112550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g112560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Bo4g117050.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g117110.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g117130.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g117140.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g117160.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g136080.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g161200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g170600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g186210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g186800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Bo4g186860.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |