PlantSME Plant secondary metabolism enzyme database

Cercis canadensis (cercis_canadensis)

Imported from atlas release summary for Cercis canadensis.

1528
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.44% Alkaloid pathway 24.02% Phenylpropanoid pathway 22.45% Flavonoid pathway 13.81% Rosmarinic acid pathway 7.53% Steroid pathway 5.76%
Family Distribution
C4H 5.97% C3'H/CYP98A 5.41% BAHD 4.53% CYP76 4.22% UGT 3.8% IFS 3.31% 7DLGT 3.24% F3H 3.24%
Other Families 66.28%
More Families (95)
UFGT 133 3.24% POD 118 2.88% T3O 110 2.68% DWF4/CYP90B1 98 2.39% 4CL 96 2.34% NMT 95 2.31% COMT 90 2.19% CODM/T6ODM 89 2.17% F3'H/CYP75B 79 1.92% CAD 75 1.83% TPS 69 1.68% CAS 68 1.66% BR6OX2/CYP85A2 67 1.63% H6H 64 1.56% STR 61 1.49% GES 56 1.36% F5H/CYP84A 51 1.24% FNS 46 1.12% G8O/G8H 45 1.1% SMT1/SMT2/SMT3 45 1.1% T16H 44 1.07% 16OMT 44 1.07% LAC 44 1.07% HCT 43 1.05% CYP71 43 1.05% CSE 42 1.02% GS 41 1.0% PYKS 41 1.0% TRI/TRII 41 1.0% CYP90D1 39 0.95% IO 38 0.93% BBE 34 0.83% SGD 34 0.83% RAS 34 0.83% 7DLH 29 0.71% ANS/LDOX 29 0.71% IFR 28 0.68% NCS 27 0.66% COR 26 0.63% CHS 26 0.63% F3'5'H/CYP75A 25 0.61% BR6OX1/CYP85A1 24 0.58% CYP51G1 21 0.51% TAT 20 0.49% SLS 18 0.44% 8HGO 18 0.44% PMT 18 0.44% ANR 18 0.44% CCR 16 0.39% LAMT 15 0.37% CHI 13 0.32% HPPR 13 0.32% PAL 12 0.29% CCoAOMT 12 0.29% ROT3/CYP90C1 12 0.29% CPD/CYP90A1 12 0.29% TYDC_DDC 10 0.24% MPO 9 0.22% CNMT 9 0.22% DFR 9 0.22% SQS/FDFT1 9 0.22% AACT 9 0.22% ISY 8 0.19% CPR 8 0.19% DXS 8 0.19% CYP719 7 0.17% CYP80B1 7 0.17% 6OMT_4OMT_SOMT 6 0.15% SQE 6 0.15% GGPPS 6 0.15% DET2 5 0.12% MVK 5 0.12% FPPS 5 0.12% FLS 4 0.1% SMO1/SMO2 4 0.1% MVD 4 0.1% HDS/IspG 3 0.07% HMGS 3 0.07% IDI 3 0.07% XMT_MXMT_DXMT 2 0.05% TDC 2 0.05% HYD1 2 0.05% DWF7 2 0.05% FK 2 0.05% MCT/IspD 2 0.05% CMK/IspE 2 0.05% HMGR 2 0.05% ADC 1 0.02% ODC 1 0.02% CPI1 1 0.02% DWF5 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 404 19 BAHD (143) View species results
Alkaloid pathway 367 25 7DLGT (69) View species results
Phenylpropanoid pathway 343 12 POD (103) View species results
Flavonoid pathway 211 12 UFGT (123) View species results
Rosmarinic acid pathway 115 7 C4H (43) View species results
Steroid pathway 88 10 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1545 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 263 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status
Ccanascaffold1311|size205010035300 Flavonoid CHI medium pass
Ccanascaffold2081|size152310098090 Flavonoid CHI medium pass
Ccanascaffold222|size3485070107650 Flavonoid CHI medium pass
Ccanascaffold222|size3485070107660 Flavonoid CHI medium pass
Ccanascaffold24|size12864290123930 Flavonoid CHI low borderline
Ccanascaffold314|size2716080159550 Flavonoid CHI medium pass
Ccanascaffold674|size1216760279620 Flavonoid CHI medium pass
Ccanascaffold6|size20379910287190 Flavonoid CHI low borderline
Ccanascaffold80|size7052260307100 Flavonoid CHI medium pass
Ccanascaffold819|size662780307790 Flavonoid CHI medium pass
Ccanascaffold828|size917120309170 Flavonoid CHI low borderline
Ccanascaffold82|size7016250309380 Flavonoid CHI low borderline
Ccanascaffold94|size6338760328810 Flavonoid CHI medium pass