PlantSME Plant secondary metabolism enzyme database

Cercis canadensis (cercis_canadensis)

Imported from atlas release summary for Cercis canadensis.

1528
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.44% Alkaloid pathway 24.02% Phenylpropanoid pathway 22.45% Flavonoid pathway 13.81% Rosmarinic acid pathway 7.53% Steroid pathway 5.76%
Family Distribution
C4H 5.97% C3'H/CYP98A 5.41% BAHD 4.53% CYP76 4.22% UGT 3.8% IFS 3.31% 7DLGT 3.24% F3H 3.24%
Other Families 66.28%
More Families (95)
UFGT 133 3.24% POD 118 2.88% T3O 110 2.68% DWF4/CYP90B1 98 2.39% 4CL 96 2.34% NMT 95 2.31% COMT 90 2.19% CODM/T6ODM 89 2.17% F3'H/CYP75B 79 1.92% CAD 75 1.83% TPS 69 1.68% CAS 68 1.66% BR6OX2/CYP85A2 67 1.63% H6H 64 1.56% STR 61 1.49% GES 56 1.36% F5H/CYP84A 51 1.24% FNS 46 1.12% G8O/G8H 45 1.1% SMT1/SMT2/SMT3 45 1.1% T16H 44 1.07% 16OMT 44 1.07% LAC 44 1.07% HCT 43 1.05% CYP71 43 1.05% CSE 42 1.02% GS 41 1.0% PYKS 41 1.0% TRI/TRII 41 1.0% CYP90D1 39 0.95% IO 38 0.93% BBE 34 0.83% SGD 34 0.83% RAS 34 0.83% 7DLH 29 0.71% ANS/LDOX 29 0.71% IFR 28 0.68% NCS 27 0.66% COR 26 0.63% CHS 26 0.63% F3'5'H/CYP75A 25 0.61% BR6OX1/CYP85A1 24 0.58% CYP51G1 21 0.51% TAT 20 0.49% SLS 18 0.44% 8HGO 18 0.44% PMT 18 0.44% ANR 18 0.44% CCR 16 0.39% LAMT 15 0.37% CHI 13 0.32% HPPR 13 0.32% PAL 12 0.29% CCoAOMT 12 0.29% ROT3/CYP90C1 12 0.29% CPD/CYP90A1 12 0.29% TYDC_DDC 10 0.24% MPO 9 0.22% CNMT 9 0.22% DFR 9 0.22% SQS/FDFT1 9 0.22% AACT 9 0.22% ISY 8 0.19% CPR 8 0.19% DXS 8 0.19% CYP719 7 0.17% CYP80B1 7 0.17% 6OMT_4OMT_SOMT 6 0.15% SQE 6 0.15% GGPPS 6 0.15% DET2 5 0.12% MVK 5 0.12% FPPS 5 0.12% FLS 4 0.1% SMO1/SMO2 4 0.1% MVD 4 0.1% HDS/IspG 3 0.07% HMGS 3 0.07% IDI 3 0.07% XMT_MXMT_DXMT 2 0.05% TDC 2 0.05% HYD1 2 0.05% DWF7 2 0.05% FK 2 0.05% MCT/IspD 2 0.05% CMK/IspE 2 0.05% HMGR 2 0.05% ADC 1 0.02% ODC 1 0.02% CPI1 1 0.02% DWF5 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02% MDS/IspF 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 404 19 BAHD (143) View species results
Alkaloid pathway 367 25 7DLGT (69) View species results
Phenylpropanoid pathway 343 12 POD (103) View species results
Flavonoid pathway 211 12 UFGT (123) View species results
Rosmarinic acid pathway 115 7 C4H (43) View species results
Steroid pathway 88 10 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1545 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 263 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
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Gene Pathway Family Confidence Status
Ccanascaffold159|size5570430060270 Steroid CPD/CYP90A1 low borderline
Ccanascaffold166|size4294030065810 Steroid CPD/CYP90A1 low borderline
Ccanascaffold31|size11096880162100 Steroid CPD/CYP90A1 medium borderline
Ccanascaffold3|size25844690196790 Steroid CPD/CYP90A1 low borderline
Ccanascaffold420|size2048190208050 Steroid CPD/CYP90A1 low borderline
Ccanascaffold51|size9392630241950 Steroid CPD/CYP90A1 medium borderline
Ccanascaffold56|size8139620253970 Steroid CPD/CYP90A1 low borderline
Ccanascaffold693|size1339750283200 Steroid CPD/CYP90A1 medium borderline
Ccanascaffold784|size721540299920 Steroid CPD/CYP90A1 medium borderline
Ccanascaffold840|size776070311660 Steroid CPD/CYP90A1 low borderline
Ccanascaffold843|size1206080311870 Steroid CPD/CYP90A1 low borderline
Ccanascaffold90|size12695360324300 Steroid CPD/CYP90A1 low borderline