PlantSME Plant secondary metabolism enzyme database

Chara braunii (chara_braunii)

Imported from atlas release summary for Chara braunii.

366
Candidate Protein Records
139
Pathway-Level Records
492
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.78% Alkaloid pathway 24.46% Phenylpropanoid pathway 18.71% Steroid pathway 18.71% Rosmarinic acid pathway 5.76% Flavonoid pathway 3.6%
Family Distribution
BAHD 11.59% NMT 8.33% 4CL 5.49% POD 4.88% STR 3.86% C4H 3.86% IFR 3.66% C3'H/CYP98A 3.46%
Other Families 54.88%
More Families (79)
CYP76 15 3.05% CYP71 14 2.85% CAS 12 2.44% TRI/TRII 9 1.83% SMT1/SMT2/SMT3 9 1.83% IO 8 1.63% CNMT 8 1.63% F3'H/CYP75B 8 1.63% BR6OX2/CYP85A2 8 1.63% CPR 7 1.42% GS 6 1.22% PAL 6 1.22% CSE 6 1.22% CPD/CYP90A1 6 1.22% DWF4/CYP90B1 6 1.22% PYKS 5 1.02% CHI 5 1.02% IFS 5 1.02% MVK 5 1.02% LAMT 4 0.81% FNS 4 0.81% HCT 4 0.81% SQS/FDFT1 4 0.81% BR6OX1/CYP85A1 4 0.81% PMK 4 0.81% H6H 3 0.61% SGD 3 0.61% PMT 3 0.61% T16H 3 0.61% RAS 3 0.61% DET2 3 0.61% DWF7 3 0.61% IDI 3 0.61% GGPPS 3 0.61% MVD 3 0.61% FPPS 3 0.61% AACT 3 0.61% TDC 2 0.41% TYDC_DDC 2 0.41% 8HGO 2 0.41% SLS 2 0.41% ADC 2 0.41% CYP80F1 2 0.41% CYP719 2 0.41% T3O 2 0.41% MPO 2 0.41% F3H 2 0.41% F3'5'H/CYP75A 2 0.41% COMT 2 0.41% SQE 2 0.41% SMO1/SMO2 2 0.41% FK 2 0.41% CPI1 2 0.41% MCT/IspD 2 0.41% HDR/IspH 2 0.41% DXR 2 0.41% UGT 2 0.41% GES 1 0.2% 16OMT 1 0.2% G8O/G8H 1 0.2% CODM/T6ODM 1 0.2% COR 1 0.2% UFGT 1 0.2% DFR 1 0.2% ANR 1 0.2% F5H/CYP84A 1 0.2% CCR 1 0.2% CAD 1 0.2% CYP51G1 1 0.2% DWF5 1 0.2% CYP90D1 1 0.2% DWF1 1 0.2% HYD1 1 0.2% HDS/IspG 1 0.2% DXS 1 0.2% TPS 1 0.2% CMK/IspE 1 0.2% HMGR 1 0.2% MDS/IspF 1 0.2%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 40 15 BAHD (17) View species results
Alkaloid pathway 34 12 STR (9) View species results
Phenylpropanoid pathway 26 4 POD (17) View species results
Steroid pathway 26 10 CAS (9) View species results
Rosmarinic acid pathway 8 3 CPR (5) View species results
Flavonoid pathway 5 3 IFR (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 21 127 BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, SLS, T16H, T3O
BAHD/acyltransferase 3 64 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
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Protein/Isoform Record Pathway Family Confidence Status
GBG61419 Alkaloid 8HGO medium borderline
GBG76727 Alkaloid 8HGO low borderline