PlantSME Plant secondary metabolism enzyme database

Chara braunii (chara_braunii)

Imported from atlas release summary for Chara braunii.

139
Candidate Genes
87
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.78% Alkaloid pathway 24.46% Phenylpropanoid pathway 18.71% Steroid pathway 18.71% Rosmarinic acid pathway 5.76% Flavonoid pathway 3.6%
Family Distribution
BAHD 11.59% NMT 8.33% 4CL 5.49% POD 4.88% STR 3.86% C4H 3.86% IFR 3.66% C3'H/CYP98A 3.46%
Other Families 54.88%
More Families (79)
CYP76 15 3.05% CYP71 14 2.85% CAS 12 2.44% TRI/TRII 9 1.83% SMT1/SMT2/SMT3 9 1.83% IO 8 1.63% CNMT 8 1.63% F3'H/CYP75B 8 1.63% BR6OX2/CYP85A2 8 1.63% CPR 7 1.42% GS 6 1.22% PAL 6 1.22% CSE 6 1.22% CPD/CYP90A1 6 1.22% DWF4/CYP90B1 6 1.22% PYKS 5 1.02% CHI 5 1.02% IFS 5 1.02% MVK 5 1.02% LAMT 4 0.81% FNS 4 0.81% HCT 4 0.81% SQS/FDFT1 4 0.81% BR6OX1/CYP85A1 4 0.81% PMK 4 0.81% H6H 3 0.61% SGD 3 0.61% PMT 3 0.61% T16H 3 0.61% RAS 3 0.61% DET2 3 0.61% DWF7 3 0.61% IDI 3 0.61% GGPPS 3 0.61% MVD 3 0.61% FPPS 3 0.61% AACT 3 0.61% TDC 2 0.41% TYDC_DDC 2 0.41% 8HGO 2 0.41% SLS 2 0.41% ADC 2 0.41% CYP80F1 2 0.41% CYP719 2 0.41% T3O 2 0.41% MPO 2 0.41% F3H 2 0.41% F3'5'H/CYP75A 2 0.41% COMT 2 0.41% SQE 2 0.41% SMO1/SMO2 2 0.41% FK 2 0.41% CPI1 2 0.41% MCT/IspD 2 0.41% HDR/IspH 2 0.41% DXR 2 0.41% UGT 2 0.41% GES 1 0.2% 16OMT 1 0.2% G8O/G8H 1 0.2% CODM/T6ODM 1 0.2% COR 1 0.2% UFGT 1 0.2% DFR 1 0.2% ANR 1 0.2% F5H/CYP84A 1 0.2% CCR 1 0.2% CAD 1 0.2% CYP51G1 1 0.2% DWF5 1 0.2% CYP90D1 1 0.2% DWF1 1 0.2% HYD1 1 0.2% HDS/IspG 1 0.2% DXS 1 0.2% TPS 1 0.2% CMK/IspE 1 0.2% HMGR 1 0.2% MDS/IspF 1 0.2%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 40 15 BAHD (17) View species results
Alkaloid pathway 34 12 STR (9) View species results
Phenylpropanoid pathway 26 4 POD (17) View species results
Steroid pathway 26 10 CAS (9) View species results
Rosmarinic acid pathway 8 3 CPR (5) View species results
Flavonoid pathway 5 3 IFR (2) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 21 127 BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, SLS, T16H, T3O
BAHD/acyltransferase 3 64 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
Reset
Gene Pathway Family Confidence Status Best Target
GBG60676 Terpenoid CYP76 low borderline CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
GBG60678 Terpenoid CYP76 low borderline CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
GBG60679 Terpenoid CYP76 low borderline CYP76__00014__sp_I3PFJ5_C76AD_BETVU
GBG60680 Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
GBG60692 Terpenoid CYP76 low borderline CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
GBG61503 Terpenoid CYP76 low borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
GBG68397 Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
GBG68399 Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
GBG69640 Terpenoid CYP76 low borderline CYP76__00018__sp_Q69X58_C76M7_ORYSJ
GBG70029 Terpenoid CYP76 low borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
GBG70035 Terpenoid CYP76 low borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
GBG72988 Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
GBG76859 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
GBG86175 Terpenoid CYP76 low borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
GBG89340 Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO