Chlamydomonas schloesseri (chlamydomonas_schloesseri)
Imported from atlas release summary for Chlamydomonas schloesseri.
112
Candidate Genes
89
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
112
Candidate Genes
BAHD
6.34%
4CL
6.18%
C3'H/CYP98A
6.18%
C4H
5.68%
NMT
4.51%
STR
4.01%
IFR
3.84%
CYP76
3.67%
Other Families
59.6%
More Families (81)
POD
19
3.17%
CNMT
18
3.01%
FNS
18
3.01%
DWF4/CYP90B1
18
3.01%
CSE
17
2.84%
CYP71
15
2.5%
GS
13
2.17%
T3O
12
2.0%
TRI/TRII
12
2.0%
SMT1/SMT2/SMT3
12
2.0%
CYP90D1
12
2.0%
IFS
11
1.84%
CAD
11
1.84%
CPR
11
1.84%
IO
9
1.5%
PYKS
7
1.17%
ANR
7
1.17%
SLS
6
1.0%
BR6OX2/CYP85A2
5
0.83%
CAS
5
0.83%
DET2
5
0.83%
CYP719
4
0.67%
F3'5'H/CYP75A
4
0.67%
F3'H/CYP75B
4
0.67%
BBE
3
0.5%
MPO
3
0.5%
CYP80F1
3
0.5%
COR
3
0.5%
ODC
3
0.5%
PAL
3
0.5%
CCR
3
0.5%
SQS/FDFT1
3
0.5%
AACT
3
0.5%
GGPPS
3
0.5%
FPPS
3
0.5%
MVK
3
0.5%
CMK/IspE
3
0.5%
8HGO
2
0.33%
PMT
2
0.33%
G8O/G8H
2
0.33%
T16H
2
0.33%
16OMT
2
0.33%
NCS
2
0.33%
TDC
2
0.33%
UFGT
2
0.33%
F3H
2
0.33%
LAC
2
0.33%
F5H/CYP84A
2
0.33%
BR6OX1/CYP85A1
2
0.33%
CPI1
2
0.33%
CPD/CYP90A1
2
0.33%
HYD1
2
0.33%
IDI
2
0.33%
HDS/IspG
2
0.33%
DXS
2
0.33%
MCT/IspD
2
0.33%
7DLGT
1
0.17%
CODM/T6ODM
1
0.17%
6OMT_4OMT_SOMT
1
0.17%
ADC
1
0.17%
CYP80B1
1
0.17%
H6H
1
0.17%
TYDC_DDC
1
0.17%
CHI
1
0.17%
DFR
1
0.17%
CCoAOMT
1
0.17%
HCT
1
0.17%
COMT
1
0.17%
TAT
1
0.17%
RAS
1
0.17%
FK
1
0.17%
DWF7
1
0.17%
SQE
1
0.17%
CYP51G1
1
0.17%
ROT3/CYP90C1
1
0.17%
MVD
1
0.17%
HDR/IspH
1
0.17%
MDS/IspF
1
0.17%
DXR
1
0.17%
UGT
1
0.17%
HMGS
1
0.17%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 35 | 14 | BAHD (14) | View species results |
| Alkaloid pathway | 29 | 8 | GS (6) | View species results |
| Phenylpropanoid pathway | 23 | 5 | POD (15) | View species results |
| Steroid pathway | 16 | 9 | CAS (5) | View species results |
| Flavonoid pathway | 5 | 3 | IFR (3) | View species results |
| Rosmarinic acid pathway | 4 | 2 | CPR (3) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 209 | BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 40 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| jgi|Chlsc1|10056|g4963.t1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| jgi|Chlsc1|10916|g7522.t1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| jgi|Chlsc1|11858|g8265.t1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| jgi|Chlsc1|1279|g7808.t1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| jgi|Chlsc1|13175|g374.t1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| jgi|Chlsc1|13816|g14784.t1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| jgi|Chlsc1|14395|g17216.t1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| jgi|Chlsc1|14483|g15661.t1 | Alkaloid | NMT | medium | pass | NMT__00027__sp_Q10MI4_EZ1_ORYSJ |
| jgi|Chlsc1|14556|g1059.t1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| jgi|Chlsc1|14875|g7129.t1 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| jgi|Chlsc1|15363|g10142.t1 | Alkaloid | NMT | medium | borderline | NMT__00004__sp_A0A1C9U5X7_NMT4_PAPSO |
| jgi|Chlsc1|15927|g9857.t1 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| jgi|Chlsc1|1599|g10806.t1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| jgi|Chlsc1|2139|g16021.t1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| jgi|Chlsc1|2218|g16104.t1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| jgi|Chlsc1|3078|g17107.t1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| jgi|Chlsc1|3938|g4030.t1 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| jgi|Chlsc1|4980|g12447.t1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| jgi|Chlsc1|6285|g5563.t1 | Alkaloid | NMT | medium | pass | NMT__00033__sp_Q5QD03_SUVH3_CHLRE |
| jgi|Chlsc1|660|g16842.t1 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| jgi|Chlsc1|7583|g11151.t1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| jgi|Chlsc1|7584|g11152.t1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| jgi|Chlsc1|7769|g11335.t1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| jgi|Chlsc1|7787|g11352.t1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| jgi|Chlsc1|9016|g2479.t1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| jgi|Chlsc1|935|g8143.t1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| jgi|Chlsc1|9963|g3761.t1 | Alkaloid | NMT | low | borderline | NMT__00039__sp_Q84W92_ANM13_ARATH |