PlantSME Plant secondary metabolism enzyme database

Chlamydomonas schloesseri (chlamydomonas_schloesseri)

Imported from atlas release summary for Chlamydomonas schloesseri.

112
Candidate Genes
89
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.25% Alkaloid pathway 25.89% Phenylpropanoid pathway 20.54% Steroid pathway 14.29% Flavonoid pathway 4.46% Rosmarinic acid pathway 3.57%
Family Distribution
BAHD 6.34% 4CL 6.18% C3'H/CYP98A 6.18% C4H 5.68% NMT 4.51% STR 4.01% IFR 3.84% CYP76 3.67%
Other Families 59.6%
More Families (81)
POD 19 3.17% CNMT 18 3.01% FNS 18 3.01% DWF4/CYP90B1 18 3.01% CSE 17 2.84% CYP71 15 2.5% GS 13 2.17% T3O 12 2.0% TRI/TRII 12 2.0% SMT1/SMT2/SMT3 12 2.0% CYP90D1 12 2.0% IFS 11 1.84% CAD 11 1.84% CPR 11 1.84% IO 9 1.5% PYKS 7 1.17% ANR 7 1.17% SLS 6 1.0% BR6OX2/CYP85A2 5 0.83% CAS 5 0.83% DET2 5 0.83% CYP719 4 0.67% F3'5'H/CYP75A 4 0.67% F3'H/CYP75B 4 0.67% BBE 3 0.5% MPO 3 0.5% CYP80F1 3 0.5% COR 3 0.5% ODC 3 0.5% PAL 3 0.5% CCR 3 0.5% SQS/FDFT1 3 0.5% AACT 3 0.5% GGPPS 3 0.5% FPPS 3 0.5% MVK 3 0.5% CMK/IspE 3 0.5% 8HGO 2 0.33% PMT 2 0.33% G8O/G8H 2 0.33% T16H 2 0.33% 16OMT 2 0.33% NCS 2 0.33% TDC 2 0.33% UFGT 2 0.33% F3H 2 0.33% LAC 2 0.33% F5H/CYP84A 2 0.33% BR6OX1/CYP85A1 2 0.33% CPI1 2 0.33% CPD/CYP90A1 2 0.33% HYD1 2 0.33% IDI 2 0.33% HDS/IspG 2 0.33% DXS 2 0.33% MCT/IspD 2 0.33% 7DLGT 1 0.17% CODM/T6ODM 1 0.17% 6OMT_4OMT_SOMT 1 0.17% ADC 1 0.17% CYP80B1 1 0.17% H6H 1 0.17% TYDC_DDC 1 0.17% CHI 1 0.17% DFR 1 0.17% CCoAOMT 1 0.17% HCT 1 0.17% COMT 1 0.17% TAT 1 0.17% RAS 1 0.17% FK 1 0.17% DWF7 1 0.17% SQE 1 0.17% CYP51G1 1 0.17% ROT3/CYP90C1 1 0.17% MVD 1 0.17% HDR/IspH 1 0.17% MDS/IspF 1 0.17% DXR 1 0.17% UGT 1 0.17% HMGS 1 0.17%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 35 14 BAHD (14) View species results
Alkaloid pathway 29 8 GS (6) View species results
Phenylpropanoid pathway 23 5 POD (15) View species results
Steroid pathway 16 9 CAS (5) View species results
Flavonoid pathway 5 3 IFR (3) View species results
Rosmarinic acid pathway 4 2 CPR (3) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 209 BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 40 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
jgi|Chlsc1|3017|g17047.t1 Phenylpropanoid POD medium pass POD__00005__sp_O22448_GPX5_CHLRE
jgi|Chlsc1|3744|g598.t1 Phenylpropanoid POD low borderline POD__00006__sp_O22850_GPX3_ARATH
jgi|Chlsc1|5276|g2669.t1 Phenylpropanoid POD medium pass POD__00012__sp_Q10N21_APX1_ORYSJ
jgi|Chlsc1|5812|g11779.t1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
jgi|Chlsc1|5926|g9968.t2 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
jgi|Chlsc1|5927|g9968.t1 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
jgi|Chlsc1|6324|g5598.t1 Phenylpropanoid POD medium pass POD__00015__sp_Q69SV0_APX8_ORYSJ
jgi|Chlsc1|8306|g8615.t1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH
jgi|Chlsc1|9577|g3380.t1 Phenylpropanoid POD medium pass POD__00016__sp_Q6QPJ6_PRXQ_POPJC