Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_09068.1|Cr_LG_4:17885241-17887013|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_09971.1|Cr_LG_4:29477579-29478792|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_09972.1|Cr_LG_4:29505532-29508737|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_09982.1|Cr_LG_4:29623921-29625386|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_10412.1|Cr_LG_4:34707380-34710814|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_10642.1|Cr_LG_4:38849344-38851547|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_10700.1|Cr_LG_4:39965920-39967615|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_10862.1|Cr_LG_4:43108956-43110191|minus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_10863.1|Cr_LG_4:43128230-43130747|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_11023.1|Cr_LG_4:47076194-47078423|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_11323.1|Cr_LG_5:1202484-1204055|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_11324.1|Cr_LG_5:1216244-1217183|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_11325.1|Cr_LG_5:1221406-1221978|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_11326.1|Cr_LG_5:1233139-1234758|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_11328.1|Cr_LG_5:1289367-1290682|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_11329.1|Cr_LG_5:1332008-1334456|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_11629.1|Cr_LG_5:5864799-5868896|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_11965.1|Cr_LG_5:10619688-10627999|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_12584.1|Cr_LG_5:17351266-17353340|minus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_12586.1|Cr_LG_5:17397066-17398853|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_12963.1|Cr_LG_5:21936051-21943209|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_13470.1|Cr_LG_5:30421223-30425533|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_14106.1|Cr_LG_5:43111717-43114537|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_14570.1|Cr_LG_6:5514283-5515939|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_14667.1|Cr_LG_6:6514309-6515253|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_14714.1|Cr_LG_6:7104552-7107441|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_15005.1|Cr_LG_6:11011544-11013439|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_15648.1|Cr_LG_6:19200742-19202686|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_15649.1|Cr_LG_6:19205425-19207464|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_15661.1|Cr_LG_6:19420324-19423887|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_15995.1|Cr_LG_6:23010214-23011797|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_15996.1|Cr_LG_6:23028651-23030297|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_15997.1|Cr_LG_6:23043255-23045310|minus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_15999.1|Cr_LG_6:23061089-23062884|minus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_16257.1|Cr_LG_6:26801704-26815406|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_16259.1|Cr_LG_6:26833960-26836460|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_16313.1|Cr_LG_6:27904601-27906311|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_16511.1|Cr_LG_6:30650176-30654596|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_17055.1|Cr_LG_6:41138666-41140575|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_17426.1|Cr_LG_6:49535883-49538118|plus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_17463.1|Cr_LG_6:50104363-50106436|minus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_17712.1|Cr_LG_6:54071264-54084985|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_18039.1|Cr_LG_7:1251415-1255464|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_18047.1|Cr_LG_7:1393771-1395723|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_18048.1|Cr_LG_7:1396706-1400222|minus| | Rosmarinic Acid | C4H | medium | pass |
| Cr_18119.1|Cr_LG_7:2341316-2344736|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_18199.1|Cr_LG_7:3962275-3964276|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_18269.1|Cr_LG_7:4790373-4793761|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_18321.1|Cr_LG_7:5380597-5384068|minus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_18393.1|Cr_LG_7:6580731-6584511|minus| | Rosmarinic Acid | C4H | low | borderline |