PlantSME Plant secondary metabolism enzyme database

Cicer reticulatum (cicer_reticulatum)

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Imported from atlas release summary for Cicer reticulatum.

1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.15% Alkaloid pathway 22.47% Phenylpropanoid pathway 21.3% Flavonoid pathway 14.87% Rosmarinic acid pathway 8.86% Steroid pathway 5.35%
Family Distribution
C3'H/CYP98A 5.5% BAHD 5.47% C4H 5.15% 4CL 4.97% UGT 4.73% UFGT 4.37% 7DLGT 4.34% POD 4.06%
Other Families 61.41%
More Families (96)
IFS 98 3.46% CYP76 94 3.32% T3O 85 3.0% F3H 85 3.0% NMT 72 2.54% DWF4/CYP90B1 62 2.19% STR 54 1.9% CODM/T6ODM 52 1.83% F3'H/CYP75B 46 1.62% H6H 45 1.59% BR6OX2/CYP85A2 45 1.59% SMT1/SMT2/SMT3 41 1.45% CYP71 36 1.27% SGD 35 1.23% CSE 33 1.16% PYKS 32 1.13% TRI/TRII 31 1.09% CAD 31 1.09% LAC 30 1.06% COMT 27 0.95% RAS 27 0.95% IFR 26 0.92% GS 24 0.85% IO 24 0.85% CAS 24 0.85% HCT 23 0.81% PMT 20 0.71% 7DLH 19 0.67% COR 19 0.67% ANR 19 0.67% CCR 19 0.67% 16OMT 18 0.63% TPS 18 0.63% T16H 17 0.6% BBE 17 0.6% GES 17 0.6% BR6OX1/CYP85A1 17 0.6% CYP90D1 17 0.6% FNS 16 0.56% SLS 15 0.53% PAL 15 0.53% CYP51G1 15 0.53% F3'5'H/CYP75A 14 0.49% NCS 13 0.46% ROT3/CYP90C1 13 0.46% G8O/G8H 12 0.42% CNMT 11 0.39% TAT 11 0.39% CPD/CYP90A1 11 0.39% 8HGO 10 0.35% ANS/LDOX 10 0.35% CHS 10 0.35% DFR 9 0.32% MVD 9 0.32% MPO 8 0.28% DET2 8 0.28% GGPPS 8 0.28% DXS 8 0.28% AACT 8 0.28% CHI 7 0.25% F5H/CYP84A 7 0.25% CCoAOMT 7 0.25% CPR 7 0.25% SQS/FDFT1 7 0.25% LAMT 6 0.21% HPPR 6 0.21% ISY 5 0.18% CYP719 4 0.14% SQE 4 0.14% SMO1/SMO2 4 0.14% TDC 3 0.11% FLS 3 0.11% HMGR 3 0.11% MVK 3 0.11% MCT/IspD 3 0.11% CYP80B1 2 0.07% ODC 2 0.07% TYDC_DDC 2 0.07% DWF1 2 0.07% FPPS 2 0.07% DXR 2 0.07% HDR/IspH 2 0.07% HMGS 2 0.07% CYP80F1 1 0.04% XMT_MXMT_DXMT 1 0.04% ADC 1 0.04% FK 1 0.04% CPI1 1 0.04% DWF7 1 0.04% DWF5 1 0.04% HYD1 1 0.04% IDI 1 0.04% HDS/IspG 1 0.04% PMK 1 0.04% CMK/IspE 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 325 19 UGT (131) View species results
Alkaloid pathway 269 20 7DLGT (56) View species results
Phenylpropanoid pathway 255 11 POD (106) View species results
Flavonoid pathway 178 9 UFGT (114) View species results
Rosmarinic acid pathway 106 7 C4H (42) View species results
Steroid pathway 64 13 SMT1/SMT2/SMT3 (23) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 956 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 205 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status Best Target
Cr_02579.1|Cr_LG_1:36751613-36755085|minus| Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Cr_02580.1|Cr_LG_1:36760275-36767013|minus| Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Cr_10862.1|Cr_LG_4:43108956-43110191|minus| Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Cr_10863.1|Cr_LG_4:43128230-43130747|plus| Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Cr_11023.1|Cr_LG_4:47076194-47078423|plus| Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Cr_11324.1|Cr_LG_5:1216244-1217183|plus| Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Cr_15995.1|Cr_LG_6:23010214-23011797|plus| Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
Cr_15999.1|Cr_LG_6:23061089-23062884|minus| Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Cr_16257.1|Cr_LG_6:26801704-26815406|plus| Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Cr_17159.1|Cr_LG_6:43543991-43544428|plus| Alkaloid G8O/G8H medium pass G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
Cr_18199.1|Cr_LG_7:3962275-3964276|plus| Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Cr_21452.1|Cr_LG_8:11131740-11137002|minus| Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU