Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_00242.1|Cr_LG_1:2081228-2086292|minus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_00503.1|Cr_LG_1:5581119-5581581|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_00835.1|Cr_LG_1:9495247-9498648|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_01174.1|Cr_LG_1:12516699-12518231|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_04225.1|Cr_LG_2:19909543-19910857|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_04895.1|Cr_LG_2:30795833-30803840|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_05593.1|Cr_LG_3:5949062-5955960|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_06108.1|Cr_LG_3:11850538-11857241|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_07193.1|Cr_LG_3:33459092-33462252|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_07995.1|Cr_LG_4:3239040-3246637|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_08343.1|Cr_LG_4:7239482-7241891|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_08944.1|Cr_LG_4:16461326-16466829|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_09012.1|Cr_LG_4:17311827-17324444|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_09311.1|Cr_LG_4:20533258-20541260|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_09780.1|Cr_LG_4:26472040-26474964|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_10339.1|Cr_LG_4:33737488-33741104|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_11220.1|Cr_LG_5:52795-58008|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_12395.1|Cr_LG_5:15202091-15207933|minus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_12984.1|Cr_LG_5:22140976-22149425|minus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_13237.1|Cr_LG_5:25819249-25822060|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_13928.1|Cr_LG_5:41047723-41052547|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_13955.1|Cr_LG_5:41330810-41338175|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_14440.1|Cr_LG_6:3688922-3690782|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_14626.1|Cr_LG_6:6129245-6133760|minus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_15473.1|Cr_LG_6:16216835-16226320|minus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_15601.1|Cr_LG_6:18330789-18339948|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_15782.1|Cr_LG_6:20778860-20781304|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_15895.1|Cr_LG_6:22060314-22065715|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_17085.1|Cr_LG_6:41928513-41935896|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_18494.1|Cr_LG_7:8200101-8201668|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_18694.1|Cr_LG_7:10899038-10900940|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_18695.1|Cr_LG_7:10956210-10957990|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_19358.1|Cr_LG_7:24744515-24747207|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_19997.1|Cr_LG_7:32375020-32381374|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_20645.1|Cr_LG_8:2291122-2294185|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_20891.1|Cr_LG_8:4676580-4683076|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_21176.1|Cr_LG_8:7812172-7821945|minus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_21196.1|Cr_LG_8:8005356-8007367|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_21675.1|Cr_LG_8:13870395-13876375|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_22253.1|Cr_LG_8:21204728-21207622|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_22254.1|Cr_LG_8:21209786-21210651|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_23325.1|scaffold1505:63713-66179|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_24491.1|scaffold2653:15853-19185|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_24933.1|scaffold3491:6222-9241|plus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_25333.1|scaffold5183:281-1710|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_25398.1|scaffold5429:208-1428|minus| | Rosmarinic Acid | 4CL | medium | pass |
| Cr_25568.1|scaffold6409:15-1148|plus| | Rosmarinic Acid | 4CL | low | borderline |
| Cr_00165.1|Cr_LG_1:1429581-1431569|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_00433.1|Cr_LG_1:4879065-4880612|plus| | Rosmarinic Acid | C4H | low | borderline |
| Cr_00695.1|Cr_LG_1:7430332-7431663|plus| | Rosmarinic Acid | C4H | low | borderline |