Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_00058.1|Cr_LG_1:509700-518203|plus| | Alkaloid | PYKS | low | borderline |
| Cr_00626.1|Cr_LG_1:6730832-6733615|minus| | Alkaloid | PYKS | low | borderline |
| Cr_00849.1|Cr_LG_1:9608457-9611685|plus| | Alkaloid | PYKS | low | borderline |
| Cr_01160.1|Cr_LG_1:12379639-12381057|plus| | Alkaloid | PYKS | low | borderline |
| Cr_02922.1|Cr_LG_1:40477498-40481128|plus| | Alkaloid | PYKS | low | borderline |
| Cr_04535.1|Cr_LG_2:26016817-26017494|plus| | Alkaloid | PYKS | low | borderline |
| Cr_07631.1|Cr_LG_3:38782057-38783604|minus| | Alkaloid | PYKS | low | borderline |
| Cr_07632.1|Cr_LG_3:38788281-38790135|minus| | Alkaloid | PYKS | low | borderline |
| Cr_07633.1|Cr_LG_3:38797008-38798064|minus| | Alkaloid | PYKS | low | borderline |
| Cr_08454.1|Cr_LG_4:8462366-8463181|minus| | Alkaloid | PYKS | low | borderline |
| Cr_08692.1|Cr_LG_4:12569816-12573502|plus| | Alkaloid | PYKS | low | borderline |
| Cr_09947.1|Cr_LG_4:29118612-29118935|minus| | Alkaloid | PYKS | low | borderline |
| Cr_10264.1|Cr_LG_4:32976072-32978509|minus| | Alkaloid | PYKS | low | borderline |
| Cr_10310.1|Cr_LG_4:33486962-33488512|plus| | Alkaloid | PYKS | low | borderline |
| Cr_10496.1|Cr_LG_4:35881194-35882684|plus| | Alkaloid | PYKS | low | borderline |
| Cr_10547.1|Cr_LG_4:36926075-36927301|plus| | Alkaloid | PYKS | low | borderline |
| Cr_12011.1|Cr_LG_5:11182050-11183180|plus| | Alkaloid | PYKS | low | borderline |
| Cr_12375.1|Cr_LG_5:14959564-14961164|minus| | Alkaloid | PYKS | high | pass |
| Cr_14166.1|Cr_LG_6:681308-682932|plus| | Alkaloid | PYKS | low | borderline |
| Cr_15458.1|Cr_LG_6:16079233-16080927|minus| | Alkaloid | PYKS | high | pass |
| Cr_15853.1|Cr_LG_6:21609143-21610954|minus| | Alkaloid | PYKS | low | borderline |
| Cr_16609.1|Cr_LG_6:31856240-31857658|minus| | Alkaloid | PYKS | high | pass |
| Cr_16696.1|Cr_LG_6:33360681-33366681|plus| | Alkaloid | PYKS | low | borderline |
| Cr_17885.1|Cr_LG_6:57267494-57269295|minus| | Alkaloid | PYKS | high | pass |
| Cr_19463.1|Cr_LG_7:25958622-25960957|minus| | Alkaloid | PYKS | low | borderline |
| Cr_21221.1|Cr_LG_8:8206384-8208719|plus| | Alkaloid | PYKS | high | pass |
| Cr_21229.1|Cr_LG_8:8266371-8267775|minus| | Alkaloid | PYKS | high | pass |
| Cr_21230.1|Cr_LG_8:8272551-8273006|minus| | Alkaloid | PYKS | high | pass |
| Cr_21679.1|Cr_LG_8:13889745-13891343|plus| | Alkaloid | PYKS | high | pass |
| Cr_21680.1|Cr_LG_8:13898473-13899206|plus| | Alkaloid | PYKS | medium | pass |
| Cr_22768.1|scaffold939:87632-90359|plus| | Alkaloid | PYKS | low | borderline |
| Cr_23440.1|scaffold1598:24344-26594|minus| | Alkaloid | PYKS | high | pass |