Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_16259.1|Cr_LG_6:26833960-26836460|minus| | Alkaloid | T3O | medium | borderline |
| Cr_16511.1|Cr_LG_6:30650176-30654596|plus| | Alkaloid | T3O | medium | borderline |
| Cr_16591.1|Cr_LG_6:31688645-31694470|minus| | Alkaloid | T3O | medium | pass |
| Cr_17055.1|Cr_LG_6:41138666-41140575|plus| | Alkaloid | T3O | medium | borderline |
| Cr_17426.1|Cr_LG_6:49535883-49538118|plus| | Alkaloid | T3O | medium | borderline |
| Cr_17463.1|Cr_LG_6:50104363-50106436|minus| | Alkaloid | T3O | medium | borderline |
| Cr_18039.1|Cr_LG_7:1251415-1255464|plus| | Alkaloid | T3O | medium | pass |
| Cr_18047.1|Cr_LG_7:1393771-1395723|minus| | Alkaloid | T3O | medium | borderline |
| Cr_18119.1|Cr_LG_7:2341316-2344736|plus| | Alkaloid | T3O | medium | borderline |
| Cr_18974.1|Cr_LG_7:16979189-16980354|minus| | Alkaloid | T3O | medium | borderline |
| Cr_19345.1|Cr_LG_7:24458722-24461338|plus| | Alkaloid | T3O | medium | pass |
| Cr_19724.1|Cr_LG_7:28916045-28919174|minus| | Alkaloid | T3O | medium | borderline |
| Cr_19793.1|Cr_LG_7:30130025-30131879|plus| | Alkaloid | T3O | medium | borderline |
| Cr_19961.1|Cr_LG_7:32057320-32061254|plus| | Alkaloid | T3O | medium | borderline |
| Cr_20041.1|Cr_LG_7:32829739-32833198|plus| | Alkaloid | T3O | medium | borderline |
| Cr_20131.1|Cr_LG_7:33934873-33937441|minus| | Alkaloid | T3O | medium | borderline |
| Cr_20198.1|Cr_LG_7:34859685-34865239|minus| | Alkaloid | T3O | medium | borderline |
| Cr_20449.1|Cr_LG_8:390203-392539|plus| | Alkaloid | T3O | medium | borderline |
| Cr_20450.1|Cr_LG_8:409278-411247|plus| | Alkaloid | T3O | medium | borderline |
| Cr_20478.1|Cr_LG_8:668732-670516|minus| | Alkaloid | T3O | medium | borderline |
| Cr_20479.1|Cr_LG_8:682450-682945|minus| | Alkaloid | T3O | medium | borderline |
| Cr_20530.1|Cr_LG_8:1148796-1153962|minus| | Alkaloid | T3O | medium | pass |
| Cr_20536.1|Cr_LG_8:1222638-1225795|plus| | Alkaloid | T3O | medium | borderline |
| Cr_21063.1|Cr_LG_8:6778294-6782701|minus| | Alkaloid | T3O | medium | borderline |
| Cr_21116.1|Cr_LG_8:7339289-7343050|plus| | Alkaloid | T3O | medium | pass |
| Cr_21633.1|Cr_LG_8:13578964-13580565|minus| | Alkaloid | T3O | medium | borderline |
| Cr_21735.1|Cr_LG_8:14502808-14505538|minus| | Alkaloid | T3O | medium | pass |
| Cr_22130.1|Cr_LG_8:20086645-20087109|minus| | Alkaloid | T3O | medium | borderline |
| Cr_23042.1|scaffold1240:39335-41710|minus| | Alkaloid | T3O | low | borderline |
| Cr_23099.1|scaffold1281:38769-52297|plus| | Alkaloid | T3O | medium | borderline |
| Cr_23112.1|scaffold1297:75852-77954|minus| | Alkaloid | T3O | medium | borderline |
| Cr_23120.1|scaffold1312:10105-16966|plus| | Alkaloid | T3O | medium | pass |
| Cr_23570.1|scaffold1708:30271-32976|minus| | Alkaloid | T3O | low | borderline |
| Cr_23775.1|scaffold1887:31597-32720|plus| | Alkaloid | T3O | medium | borderline |
| Cr_25128.1|scaffold4292:1767-3486|plus| | Alkaloid | T3O | medium | borderline |