Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_00098.1|Cr_LG_1:814661-816699|plus| | Flavonoid | UFGT | medium | pass |
| Cr_00099.1|Cr_LG_1:817147-818874|minus| | Flavonoid | UFGT | high | pass |
| Cr_00100.1|Cr_LG_1:820798-822228|plus| | Flavonoid | UFGT | medium | pass |
| Cr_00149.1|Cr_LG_1:1266876-1268366|plus| | Flavonoid | UFGT | high | pass |
| Cr_00588.1|Cr_LG_1:6309058-6310434|minus| | Flavonoid | UFGT | high | pass |
| Cr_01089.1|Cr_LG_1:11679889-11681564|minus| | Flavonoid | UFGT | medium | pass |
| Cr_01267.1|Cr_LG_1:13719455-13721000|minus| | Flavonoid | UFGT | high | pass |
| Cr_01268.1|Cr_LG_1:13736934-13738412|plus| | Flavonoid | UFGT | high | pass |
| Cr_01269.1|Cr_LG_1:13747678-13749632|plus| | Flavonoid | UFGT | high | pass |
| Cr_01270.1|Cr_LG_1:13760711-13761436|plus| | Flavonoid | UFGT | medium | pass |
| Cr_01271.1|Cr_LG_1:13773076-13774539|plus| | Flavonoid | UFGT | high | pass |
| Cr_01272.1|Cr_LG_1:13774778-13775704|minus| | Flavonoid | UFGT | high | pass |
| Cr_01273.1|Cr_LG_1:13795130-13796529|plus| | Flavonoid | UFGT | high | pass |
| Cr_01871.1|Cr_LG_1:22531318-22533210|plus| | Flavonoid | UFGT | high | pass |
| Cr_01958.1|Cr_LG_1:24622609-24624097|minus| | Flavonoid | UFGT | medium | pass |
| Cr_03094.1|Cr_LG_2:755657-757341|plus| | Flavonoid | UFGT | medium | pass |
| Cr_03207.1|Cr_LG_2:1921754-1923154|plus| | Flavonoid | UFGT | high | pass |
| Cr_03358.1|Cr_LG_2:3539702-3541398|minus| | Flavonoid | UFGT | medium | pass |
| Cr_03437.1|Cr_LG_2:4443944-4445492|minus| | Flavonoid | UFGT | medium | pass |
| Cr_03438.1|Cr_LG_2:4449180-4450595|minus| | Flavonoid | UFGT | high | pass |
| Cr_03697.1|Cr_LG_2:8870035-8872292|plus| | Flavonoid | UFGT | medium | pass |
| Cr_03698.1|Cr_LG_2:8883035-8885432|plus| | Flavonoid | UFGT | medium | pass |
| Cr_03945.1|Cr_LG_2:13012033-13013542|minus| | Flavonoid | UFGT | high | pass |
| Cr_03946.1|Cr_LG_2:13014822-13016225|minus| | Flavonoid | UFGT | medium | pass |
| Cr_04351.1|Cr_LG_2:23098690-23100171|plus| | Flavonoid | UFGT | high | pass |
| Cr_04458.1|Cr_LG_2:24540172-24542282|minus| | Flavonoid | UFGT | medium | pass |
| Cr_04459.1|Cr_LG_2:24543447-24545035|minus| | Flavonoid | UFGT | medium | pass |
| Cr_04460.1|Cr_LG_2:24554019-24556329|minus| | Flavonoid | UFGT | high | pass |
| Cr_04461.1|Cr_LG_2:24559186-24561121|minus| | Flavonoid | UFGT | high | pass |
| Cr_04530.1|Cr_LG_2:25907392-25909410|minus| | Flavonoid | UFGT | medium | pass |
| Cr_04551.1|Cr_LG_2:26242935-26245394|plus| | Flavonoid | UFGT | medium | pass |
| Cr_05038.1|Cr_LG_2:32938414-32939955|minus| | Flavonoid | UFGT | high | pass |
| Cr_05328.1|Cr_LG_3:3611719-3613491|plus| | Flavonoid | UFGT | high | pass |
| Cr_05329.1|Cr_LG_3:3618595-3620167|plus| | Flavonoid | UFGT | medium | pass |
| Cr_05331.1|Cr_LG_3:3625141-3634675|plus| | Flavonoid | UFGT | medium | pass |
| Cr_05333.1|Cr_LG_3:3635763-3637232|plus| | Flavonoid | UFGT | high | pass |
| Cr_06396.1|Cr_LG_3:15850499-15851905|plus| | Flavonoid | UFGT | medium | pass |
| Cr_06941.1|Cr_LG_3:27747108-27748478|plus| | Flavonoid | UFGT | high | pass |
| Cr_06942.1|Cr_LG_3:27764809-27766055|plus| | Flavonoid | UFGT | high | pass |
| Cr_06992.1|Cr_LG_3:28833101-28834994|plus| | Flavonoid | UFGT | medium | pass |
| Cr_07129.1|Cr_LG_3:31436435-31438247|plus| | Flavonoid | UFGT | medium | pass |
| Cr_07130.1|Cr_LG_3:31439836-31441293|plus| | Flavonoid | UFGT | low | borderline |
| Cr_07131.1|Cr_LG_3:31444771-31446177|minus| | Flavonoid | UFGT | high | pass |
| Cr_07132.1|Cr_LG_3:31466951-31468054|minus| | Flavonoid | UFGT | medium | pass |
| Cr_07386.1|Cr_LG_3:36406209-36408263|plus| | Flavonoid | UFGT | medium | pass |
| Cr_07387.1|Cr_LG_3:36413654-36415322|plus| | Flavonoid | UFGT | medium | pass |
| Cr_07592.1|Cr_LG_3:38521436-38523133|plus| | Flavonoid | UFGT | medium | pass |
| Cr_07870.1|Cr_LG_4:1586081-1587561|plus| | Flavonoid | UFGT | high | pass |
| Cr_07871.1|Cr_LG_4:1593986-1595413|plus| | Flavonoid | UFGT | medium | pass |
| Cr_07872.1|Cr_LG_4:1597965-1599404|plus| | Flavonoid | UFGT | medium | pass |