Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_03424.1|Cr_LG_2:4326242-4329722|minus| | Terpenoid | AACT | medium | borderline |
| Cr_07836.1|Cr_LG_4:1302044-1307028|minus| | Terpenoid | AACT | low | borderline |
| Cr_11014.1|Cr_LG_4:46798412-46802896|minus| | Terpenoid | AACT | medium | borderline |
| Cr_22038.1|Cr_LG_8:19186783-19197039|plus| | Terpenoid | AACT | low | borderline |
| Cr_23367.1|scaffold1540:26267-31428|minus| | Terpenoid | AACT | medium | borderline |
| Cr_23558.1|scaffold1700:35259-40446|plus| | Terpenoid | AACT | medium | borderline |
| Cr_25209.1|scaffold4755:1022-2161|minus| | Terpenoid | AACT | medium | borderline |
| Cr_25243.1|scaffold4922:203-2722|plus| | Terpenoid | AACT | medium | borderline |
| Cr_00082.1|Cr_LG_1:676054-677385|plus| | Terpenoid | BAHD | medium | pass |
| Cr_00335.1|Cr_LG_1:3232880-3239793|plus| | Terpenoid | BAHD | medium | pass |
| Cr_00476.1|Cr_LG_1:5308574-5318578|minus| | Terpenoid | BAHD | medium | pass |
| Cr_00569.1|Cr_LG_1:6150701-6152520|plus| | Terpenoid | BAHD | medium | pass |
| Cr_01106.1|Cr_LG_1:11858953-11862557|minus| | Terpenoid | BAHD | medium | pass |
| Cr_01181.1|Cr_LG_1:12593071-12599859|minus| | Terpenoid | BAHD | medium | pass |
| Cr_01225.1|Cr_LG_1:13065147-13069364|minus| | Terpenoid | BAHD | medium | pass |
| Cr_01543.1|Cr_LG_1:17444631-17455980|minus| | Terpenoid | BAHD | medium | pass |
| Cr_01614.1|Cr_LG_1:18333134-18336998|minus| | Terpenoid | BAHD | medium | pass |
| Cr_01855.1|Cr_LG_1:22289055-22295123|minus| | Terpenoid | BAHD | medium | pass |
| Cr_01880.1|Cr_LG_1:22795001-22800397|minus| | Terpenoid | BAHD | low | borderline |
| Cr_02284.1|Cr_LG_1:32266983-32284478|plus| | Terpenoid | BAHD | medium | pass |
| Cr_02655.1|Cr_LG_1:37796228-37799646|minus| | Terpenoid | BAHD | low | borderline |
| Cr_02672.1|Cr_LG_1:37926779-37930353|minus| | Terpenoid | BAHD | medium | pass |
| Cr_02790.1|Cr_LG_1:39280795-39282305|minus| | Terpenoid | BAHD | medium | pass |
| Cr_02791.1|Cr_LG_1:39289233-39290589|minus| | Terpenoid | BAHD | low | borderline |
| Cr_03119.1|Cr_LG_2:990232-992039|minus| | Terpenoid | BAHD | medium | pass |
| Cr_03170.1|Cr_LG_2:1516661-1522850|plus| | Terpenoid | BAHD | low | borderline |
| Cr_03204.1|Cr_LG_2:1884989-1887321|plus| | Terpenoid | BAHD | medium | pass |
| Cr_03402.1|Cr_LG_2:4108321-4111245|plus| | Terpenoid | BAHD | low | borderline |
| Cr_03454.1|Cr_LG_2:4722451-4729233|plus| | Terpenoid | BAHD | medium | pass |
| Cr_03694.1|Cr_LG_2:8831516-8835346|minus| | Terpenoid | BAHD | low | borderline |
| Cr_03804.1|Cr_LG_2:10592791-10594371|plus| | Terpenoid | BAHD | medium | pass |
| Cr_04548.1|Cr_LG_2:26199883-26201295|minus| | Terpenoid | BAHD | medium | pass |
| Cr_04667.1|Cr_LG_2:27678065-27681576|minus| | Terpenoid | BAHD | medium | pass |
| Cr_04696.1|Cr_LG_2:28169101-28170531|plus| | Terpenoid | BAHD | medium | pass |
| Cr_04699.1|Cr_LG_2:28202737-28204167|plus| | Terpenoid | BAHD | medium | pass |
| Cr_04952.1|Cr_LG_2:31788072-31804364|plus| | Terpenoid | BAHD | medium | pass |
| Cr_04953.1|Cr_LG_2:31812912-31819122|plus| | Terpenoid | BAHD | low | borderline |
| Cr_05082.1|Cr_LG_3:60574-64285|plus| | Terpenoid | BAHD | medium | pass |
| Cr_05153.1|Cr_LG_3:940092-947265|plus| | Terpenoid | BAHD | medium | pass |
| Cr_05396.1|Cr_LG_3:4240623-4247234|plus| | Terpenoid | BAHD | medium | pass |
| Cr_05614.1|Cr_LG_3:6155943-6157589|plus| | Terpenoid | BAHD | medium | pass |
| Cr_05741.1|Cr_LG_3:7372448-7373806|plus| | Terpenoid | BAHD | medium | pass |
| Cr_05808.1|Cr_LG_3:8445566-8447282|minus| | Terpenoid | BAHD | medium | pass |
| Cr_05905.1|Cr_LG_3:9535807-9541889|plus| | Terpenoid | BAHD | medium | pass |
| Cr_06112.1|Cr_LG_3:11899801-11903323|plus| | Terpenoid | BAHD | medium | pass |
| Cr_06236.1|Cr_LG_3:13457662-13459005|plus| | Terpenoid | BAHD | medium | pass |
| Cr_06359.1|Cr_LG_3:14985616-14990636|plus| | Terpenoid | BAHD | medium | pass |
| Cr_06393.1|Cr_LG_3:15800316-15805811|plus| | Terpenoid | BAHD | medium | pass |
| Cr_06426.1|Cr_LG_3:16359367-16365272|plus| | Terpenoid | BAHD | low | borderline |
| Cr_06464.1|Cr_LG_3:17001418-17010169|minus| | Terpenoid | BAHD | medium | pass |