Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_11152.1|Cr_LG_4:50260969-50261680|minus| | Alkaloid | 7DLH | medium | borderline |
| Cr_11153.1|Cr_LG_4:50320628-50321308|plus| | Alkaloid | 7DLH | medium | borderline |
| Cr_12963.1|Cr_LG_5:21936051-21943209|minus| | Alkaloid | 7DLH | medium | borderline |
| Cr_14857.1|Cr_LG_6:9524620-9526315|plus| | Alkaloid | 7DLH | medium | borderline |
| Cr_15247.1|Cr_LG_6:13689848-13692398|minus| | Alkaloid | 7DLH | low | borderline |
| Cr_17609.1|Cr_LG_6:52542120-52543831|minus| | Alkaloid | 7DLH | medium | borderline |
| Cr_18450.1|Cr_LG_7:7521412-7523349|plus| | Alkaloid | 7DLH | medium | borderline |
| Cr_19214.1|Cr_LG_7:22177054-22181589|minus| | Alkaloid | 7DLH | medium | borderline |
| Cr_21185.1|Cr_LG_8:7912231-7922011|plus| | Alkaloid | 7DLH | medium | borderline |
| Cr_23271.1|scaffold1475:32348-34145|plus| | Alkaloid | 7DLH | low | borderline |
| Cr_01435.1|Cr_LG_1:15829228-15832076|minus| | Alkaloid | 8HGO | medium | borderline |
| Cr_02695.1|Cr_LG_1:38217500-38220646|plus| | Alkaloid | 8HGO | medium | borderline |
| Cr_03353.1|Cr_LG_2:3509713-3519554|plus| | Alkaloid | 8HGO | medium | borderline |
| Cr_07837.1|Cr_LG_4:1307867-1310638|plus| | Alkaloid | 8HGO | medium | borderline |
| Cr_12211.1|Cr_LG_5:13371613-13387978|plus| | Alkaloid | 8HGO | medium | borderline |
| Cr_12487.1|Cr_LG_5:16282430-16286710|plus| | Alkaloid | 8HGO | medium | borderline |
| Cr_14952.1|Cr_LG_6:10498261-10506374|minus| | Alkaloid | 8HGO | medium | borderline |
| Cr_17187.1|Cr_LG_6:44331965-44334646|plus| | Alkaloid | 8HGO | medium | borderline |
| Cr_19721.1|Cr_LG_7:28877522-28882976|plus| | Alkaloid | 8HGO | low | borderline |
| Cr_21971.1|Cr_LG_8:18308234-18312294|plus| | Alkaloid | 8HGO | medium | borderline |
| Cr_15806.1|Cr_LG_6:21044911-21047827|minus| | Alkaloid | ADC | medium | pass |
| Cr_00218.1|Cr_LG_1:1860808-1862594|plus| | Alkaloid | BBE | medium | borderline |
| Cr_02565.1|Cr_LG_1:36603729-36605364|plus| | Alkaloid | BBE | medium | borderline |
| Cr_02569.1|Cr_LG_1:36648127-36649829|minus| | Alkaloid | BBE | medium | borderline |
| Cr_02570.1|Cr_LG_1:36654830-36655521|minus| | Alkaloid | BBE | medium | borderline |
| Cr_02572.1|Cr_LG_1:36691667-36692990|plus| | Alkaloid | BBE | medium | borderline |
| Cr_02610.1|Cr_LG_1:37210617-37211834|plus| | Alkaloid | BBE | medium | borderline |
| Cr_05480.1|Cr_LG_3:4990540-5000342|minus| | Alkaloid | BBE | low | borderline |
| Cr_10249.1|Cr_LG_4:32766402-32776829|minus| | Alkaloid | BBE | medium | borderline |
| Cr_11765.1|Cr_LG_5:7536420-7537435|plus| | Alkaloid | BBE | medium | borderline |
| Cr_16062.1|Cr_LG_6:23801645-23803616|minus| | Alkaloid | BBE | medium | borderline |
| Cr_16063.1|Cr_LG_6:23806159-23808010|minus| | Alkaloid | BBE | medium | borderline |
| Cr_16064.1|Cr_LG_6:23820981-23822624|minus| | Alkaloid | BBE | medium | borderline |
| Cr_16065.1|Cr_LG_6:23823896-23830940|minus| | Alkaloid | BBE | low | borderline |
| Cr_16066.1|Cr_LG_6:23835594-23837324|minus| | Alkaloid | BBE | medium | borderline |
| Cr_16109.1|Cr_LG_6:24371447-24373135|plus| | Alkaloid | BBE | medium | borderline |
| Cr_16145.1|Cr_LG_6:24897330-24898411|minus| | Alkaloid | BBE | medium | borderline |
| Cr_24670.1|scaffold2907:8602-9810|plus| | Alkaloid | BBE | medium | borderline |
| Cr_02377.1|Cr_LG_1:34293808-34299265|plus| | Alkaloid | CNMT | low | borderline |
| Cr_02889.1|Cr_LG_1:40197361-40206012|minus| | Alkaloid | CNMT | medium | borderline |
| Cr_03129.1|Cr_LG_2:1120195-1124426|minus| | Alkaloid | CNMT | low | borderline |
| Cr_12249.1|Cr_LG_5:13767315-13769312|plus| | Alkaloid | CNMT | low | borderline |
| Cr_14923.1|Cr_LG_6:10228661-10230939|plus| | Alkaloid | CNMT | low | borderline |
| Cr_15885.1|Cr_LG_6:21976725-21979478|plus| | Alkaloid | CNMT | low | borderline |
| Cr_20529.1|Cr_LG_8:1145090-1146599|plus| | Alkaloid | CNMT | low | borderline |
| Cr_20583.1|Cr_LG_8:1692758-1701673|minus| | Alkaloid | CNMT | medium | pass |
| Cr_21516.1|Cr_LG_8:12277109-12279511|minus| | Alkaloid | CNMT | low | borderline |
| Cr_22383.1|scaffold462:147160-150021|minus| | Alkaloid | CNMT | low | borderline |
| Cr_22899.1|scaffold1098:6851-9260|minus| | Alkaloid | CNMT | low | borderline |
| Cr_00371.1|Cr_LG_1:3787619-3790945|minus| | Alkaloid | CODM/T6ODM | medium | borderline |