Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cr_23277.1|scaffold1482:320-3437|minus| | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| Cr_23278.1|scaffold1482:19775-65677|minus| | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Cr_23295.1|scaffold1492:36377-36838|plus| | Terpenoid | BAHD | medium | pass | BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN |
| Cr_23527.1|scaffold1675:55906-57823|plus| | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Cr_23592.1|scaffold1729:20210-24160|plus| | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| Cr_23780.1|scaffold1888:38502-39476|plus| | Terpenoid | BAHD | medium | pass | BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN |
| Cr_23812.1|scaffold1918:24237-24695|minus| | Terpenoid | BAHD | medium | pass | BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN |
| Cr_24103.1|scaffold2192:13307-15943|plus| | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Cr_24304.1|scaffold2432:27319-30130|minus| | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Cr_24435.1|scaffold2585:10238-14106|plus| | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Cr_24755.1|scaffold3045:15667-16529|minus| | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Cr_25342.1|scaffold5220:502-1728|plus| | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Cr_25463.1|scaffold5752:469-1389|plus| | Terpenoid | BAHD | medium | pass | BAHD__00002__sp_A0A068BIF1_AT9_ACTER |
| Cr_13524.1|Cr_LG_5:31662189-31667237|plus| | Terpenoid | CMK/IspE | high | pass | CMK_IspE__00001__sp_O81014_ISPE_ARATH |
| Cr_01325.1|Cr_LG_1:14460186-14466660|plus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_02500.1|Cr_LG_1:35930077-35938115|plus| | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_03233.1|Cr_LG_2:2209298-2213166|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_03234.1|Cr_LG_2:2220017-2224462|plus| | Terpenoid | CYP71 | low | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_03240.1|Cr_LG_2:2275618-2276247|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_03880.1|Cr_LG_2:11995776-11998538|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_04140.1|Cr_LG_2:17449228-17450515|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_05416.1|Cr_LG_3:4412415-4415013|minus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_05627.1|Cr_LG_3:6255328-6257646|minus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_06033.1|Cr_LG_3:10808785-10814207|plus| | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_06170.1|Cr_LG_3:12629164-12634435|plus| | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_07557.1|Cr_LG_3:38193000-38193692|minus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_09279.1|Cr_LG_4:20210382-20212906|plus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_10397.1|Cr_LG_4:34508548-34527074|plus| | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_11323.1|Cr_LG_5:1202484-1204055|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_11324.1|Cr_LG_5:1216244-1217183|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_11325.1|Cr_LG_5:1221406-1221978|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_11326.1|Cr_LG_5:1233139-1234758|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_11328.1|Cr_LG_5:1289367-1290682|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_11329.1|Cr_LG_5:1332008-1334456|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_11956.1|Cr_LG_5:10525791-10528897|plus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_13167.1|Cr_LG_5:24380055-24383118|minus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_14049.1|Cr_LG_5:42662064-42662989|minus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_15222.1|Cr_LG_6:13409806-13413179|plus| | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_16259.1|Cr_LG_6:26833960-26836460|minus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_16600.1|Cr_LG_6:31762897-31763415|minus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_16657.1|Cr_LG_6:32795421-32798895|minus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_18401.1|Cr_LG_7:6671007-6674275|plus| | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_19961.1|Cr_LG_7:32057320-32061254|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_20131.1|Cr_LG_7:33934873-33937441|minus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_20449.1|Cr_LG_8:390203-392539|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_20450.1|Cr_LG_8:409278-411247|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_20478.1|Cr_LG_8:668732-670516|minus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_20479.1|Cr_LG_8:682450-682945|minus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |
| Cr_21690.1|Cr_LG_8:14033447-14038818|plus| | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| Cr_23099.1|scaffold1281:38769-52297|plus| | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |