Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1197
Candidate Genes
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_24872.1|scaffold3359:548-6373|minus| | Alkaloid | CODM/T6ODM | medium | borderline |
| Cr_03416.1|Cr_LG_2:4259575-4260981|minus| | Alkaloid | COR | medium | pass |
| Cr_11813.1|Cr_LG_5:8519947-8522092|plus| | Alkaloid | COR | medium | pass |
| Cr_13731.1|Cr_LG_5:36679181-36684946|minus| | Alkaloid | COR | low | borderline |
| Cr_13964.1|Cr_LG_5:41477110-41478795|minus| | Alkaloid | COR | medium | pass |
| Cr_14004.1|Cr_LG_5:41913616-41914871|plus| | Alkaloid | COR | medium | pass |
| Cr_15580.1|Cr_LG_6:18002070-18004981|plus| | Alkaloid | COR | medium | pass |
| Cr_16471.1|Cr_LG_6:30054887-30057751|minus| | Alkaloid | COR | medium | pass |
| Cr_16902.1|Cr_LG_6:37389283-37393955|minus| | Alkaloid | COR | medium | pass |
| Cr_16998.1|Cr_LG_6:39759324-39761662|plus| | Alkaloid | COR | medium | pass |
| Cr_17516.1|Cr_LG_6:51092775-51095909|plus| | Alkaloid | COR | medium | pass |
| Cr_17730.1|Cr_LG_6:54401423-54404386|plus| | Alkaloid | COR | medium | pass |
| Cr_20150.1|Cr_LG_7:34176699-34179054|minus| | Alkaloid | COR | medium | pass |
| Cr_20993.1|Cr_LG_8:5974047-5977014|plus| | Alkaloid | COR | medium | pass |
| Cr_20994.1|Cr_LG_8:5980225-5982846|plus| | Alkaloid | COR | medium | pass |
| Cr_20995.1|Cr_LG_8:6003014-6006099|plus| | Alkaloid | COR | medium | pass |
| Cr_20996.1|Cr_LG_8:6013744-6016748|plus| | Alkaloid | COR | medium | pass |
| Cr_20997.1|Cr_LG_8:6031032-6034818|plus| | Alkaloid | COR | medium | pass |
| Cr_20998.1|Cr_LG_8:6035685-6037377|plus| | Alkaloid | COR | medium | pass |
| Cr_21417.1|Cr_LG_8:10370709-10374023|plus| | Alkaloid | COR | medium | pass |
| Cr_03136.1|Cr_LG_2:1184215-1186164|plus| | Alkaloid | CYP719 | medium | borderline |
| Cr_06192.1|Cr_LG_3:12997618-12999607|minus| | Alkaloid | CYP719 | medium | borderline |
| Cr_08456.1|Cr_LG_4:8474943-8477364|minus| | Alkaloid | CYP719 | medium | borderline |
| Cr_18321.1|Cr_LG_7:5380597-5384068|minus| | Alkaloid | CYP719 | medium | borderline |
| Cr_04802.1|Cr_LG_2:29684927-29694773|plus| | Alkaloid | CYP80B1 | low | borderline |
| Cr_20432.1|Cr_LG_8:245817-250703|plus| | Alkaloid | CYP80B1 | medium | borderline |
| Cr_00636.1|Cr_LG_1:6806439-6806801|minus| | Alkaloid | CYP80F1 | low | borderline |
| Cr_02579.1|Cr_LG_1:36751613-36755085|minus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_02580.1|Cr_LG_1:36760275-36767013|minus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_10862.1|Cr_LG_4:43108956-43110191|minus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_10863.1|Cr_LG_4:43128230-43130747|plus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_11023.1|Cr_LG_4:47076194-47078423|plus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_11324.1|Cr_LG_5:1216244-1217183|plus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_15995.1|Cr_LG_6:23010214-23011797|plus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_15999.1|Cr_LG_6:23061089-23062884|minus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_16257.1|Cr_LG_6:26801704-26815406|plus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_17159.1|Cr_LG_6:43543991-43544428|plus| | Alkaloid | G8O/G8H | medium | pass |
| Cr_18199.1|Cr_LG_7:3962275-3964276|plus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_21452.1|Cr_LG_8:11131740-11137002|minus| | Alkaloid | G8O/G8H | medium | borderline |
| Cr_00341.1|Cr_LG_1:3369864-3375021|plus| | Alkaloid | GES | medium | pass |
| Cr_01678.1|Cr_LG_1:19266858-19269695|plus| | Alkaloid | GES | medium | pass |
| Cr_02008.1|Cr_LG_1:26079503-26119070|minus| | Alkaloid | GES | medium | pass |
| Cr_03887.1|Cr_LG_2:12068918-12072086|minus| | Alkaloid | GES | medium | pass |
| Cr_04162.1|Cr_LG_2:18032021-18033821|minus| | Alkaloid | GES | medium | pass |
| Cr_06011.1|Cr_LG_3:10551410-10556609|plus| | Alkaloid | GES | low | borderline |
| Cr_10902.1|Cr_LG_4:44182604-44186099|minus| | Alkaloid | GES | low | borderline |
| Cr_11482.1|Cr_LG_5:3772998-3777304|plus| | Alkaloid | GES | medium | pass |
| Cr_11483.1|Cr_LG_5:3792354-3796138|plus| | Alkaloid | GES | medium | pass |
| Cr_11484.1|Cr_LG_5:3797310-3798589|plus| | Alkaloid | GES | medium | pass |
| Cr_15703.1|Cr_LG_6:19989313-19992912|minus| | Alkaloid | GES | medium | pass |