Cicer reticulatum (cicer_reticulatum)
/
Imported from atlas release summary for Cicer reticulatum.
1432
Candidate Protein Records
1197
Pathway-Level Records
2835
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2835
Family-Level Calls
C3'H/CYP98A
5.5%
BAHD
5.47%
C4H
5.15%
4CL
4.97%
UGT
4.73%
UFGT
4.37%
7DLGT
4.34%
POD
4.06%
Other Families
61.41%
More Families (96)
IFS
98
3.46%
CYP76
94
3.32%
T3O
85
3.0%
F3H
85
3.0%
NMT
72
2.54%
DWF4/CYP90B1
62
2.19%
STR
54
1.9%
CODM/T6ODM
52
1.83%
F3'H/CYP75B
46
1.62%
H6H
45
1.59%
BR6OX2/CYP85A2
45
1.59%
SMT1/SMT2/SMT3
41
1.45%
CYP71
36
1.27%
SGD
35
1.23%
CSE
33
1.16%
PYKS
32
1.13%
TRI/TRII
31
1.09%
CAD
31
1.09%
LAC
30
1.06%
COMT
27
0.95%
RAS
27
0.95%
IFR
26
0.92%
GS
24
0.85%
IO
24
0.85%
CAS
24
0.85%
HCT
23
0.81%
PMT
20
0.71%
7DLH
19
0.67%
COR
19
0.67%
ANR
19
0.67%
CCR
19
0.67%
16OMT
18
0.63%
TPS
18
0.63%
T16H
17
0.6%
BBE
17
0.6%
GES
17
0.6%
BR6OX1/CYP85A1
17
0.6%
CYP90D1
17
0.6%
FNS
16
0.56%
SLS
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
F3'5'H/CYP75A
14
0.49%
NCS
13
0.46%
ROT3/CYP90C1
13
0.46%
G8O/G8H
12
0.42%
CNMT
11
0.39%
TAT
11
0.39%
CPD/CYP90A1
11
0.39%
8HGO
10
0.35%
ANS/LDOX
10
0.35%
CHS
10
0.35%
DFR
9
0.32%
MVD
9
0.32%
MPO
8
0.28%
DET2
8
0.28%
GGPPS
8
0.28%
DXS
8
0.28%
AACT
8
0.28%
CHI
7
0.25%
F5H/CYP84A
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
SQS/FDFT1
7
0.25%
LAMT
6
0.21%
HPPR
6
0.21%
ISY
5
0.18%
CYP719
4
0.14%
SQE
4
0.14%
SMO1/SMO2
4
0.14%
TDC
3
0.11%
FLS
3
0.11%
HMGR
3
0.11%
MVK
3
0.11%
MCT/IspD
3
0.11%
CYP80B1
2
0.07%
ODC
2
0.07%
TYDC_DDC
2
0.07%
DWF1
2
0.07%
FPPS
2
0.07%
DXR
2
0.07%
HDR/IspH
2
0.07%
HMGS
2
0.07%
CYP80F1
1
0.04%
XMT_MXMT_DXMT
1
0.04%
ADC
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
DWF7
1
0.04%
DWF5
1
0.04%
HYD1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 325 | 19 | UGT (131) | View species results |
| Alkaloid pathway | 269 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 255 | 11 | POD (106) | View species results |
| Flavonoid pathway | 178 | 9 | UFGT (114) | View species results |
| Rosmarinic acid pathway | 106 | 7 | C4H (42) | View species results |
| Steroid pathway | 64 | 13 | SMT1/SMT2/SMT3 (23) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 956 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 205 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cr_02817.1|Cr_LG_1:39546308-39547551|plus| | Alkaloid | ISY | medium | pass |
| Cr_14199.1|Cr_LG_6:1217743-1218232|minus| | Alkaloid | ISY | low | borderline |
| Cr_18875.1|Cr_LG_7:14924150-14927566|plus| | Alkaloid | ISY | low | borderline |
| Cr_20644.1|Cr_LG_8:2286357-2287758|plus| | Alkaloid | ISY | medium | pass |
| Cr_03544.1|Cr_LG_2:6389405-6396272|minus| | Alkaloid | LAMT | medium | borderline |
| Cr_05768.1|Cr_LG_3:7807207-7809658|plus| | Alkaloid | LAMT | medium | borderline |
| Cr_05769.1|Cr_LG_3:7827709-7829135|plus| | Alkaloid | LAMT | medium | borderline |
| Cr_10360.1|Cr_LG_4:34068209-34069895|plus| | Alkaloid | LAMT | medium | borderline |
| Cr_13209.1|Cr_LG_5:25253700-25259067|minus| | Alkaloid | LAMT | medium | borderline |
| Cr_23437.1|scaffold1598:45058-45842|plus| | Alkaloid | LAMT | medium | borderline |
| Cr_09021.1|Cr_LG_4:17408165-17412988|plus| | Alkaloid | MPO | medium | pass |
| Cr_09022.1|Cr_LG_4:17413385-17415796|minus| | Alkaloid | MPO | medium | pass |
| Cr_10046.1|Cr_LG_4:30324782-30329820|plus| | Alkaloid | MPO | high | pass |
| Cr_12538.1|Cr_LG_5:16838537-16843415|plus| | Alkaloid | MPO | medium | pass |
| Cr_12564.1|Cr_LG_5:17137093-17143039|minus| | Alkaloid | MPO | medium | pass |
| Cr_19012.1|Cr_LG_7:17951667-17959195|plus| | Alkaloid | MPO | high | pass |
| Cr_19617.1|Cr_LG_7:27515213-27520037|minus| | Alkaloid | MPO | medium | pass |
| Cr_19618.1|Cr_LG_7:27541220-27543977|plus| | Alkaloid | MPO | medium | pass |
| Cr_01256.1|Cr_LG_1:13563303-13565196|minus| | Alkaloid | NCS | medium | borderline |
| Cr_02194.1|Cr_LG_1:29873509-29873691|plus| | Alkaloid | NCS | low | borderline |
| Cr_04990.1|Cr_LG_2:32424055-32425503|plus| | Alkaloid | NCS | medium | pass |
| Cr_05336.1|Cr_LG_3:3662433-3663599|minus| | Alkaloid | NCS | medium | borderline |
| Cr_06203.1|Cr_LG_3:13111248-13113011|plus| | Alkaloid | NCS | medium | borderline |
| Cr_06330.1|Cr_LG_3:14501179-14504150|plus| | Alkaloid | NCS | medium | borderline |
| Cr_06369.1|Cr_LG_3:15212925-15215453|minus| | Alkaloid | NCS | medium | borderline |
| Cr_07228.1|Cr_LG_3:34121617-34122954|plus| | Alkaloid | NCS | medium | borderline |
| Cr_11438.1|Cr_LG_5:3201421-3203994|plus| | Alkaloid | NCS | medium | borderline |
| Cr_13447.1|Cr_LG_5:29911706-29918966|plus| | Alkaloid | NCS | medium | borderline |
| Cr_21318.1|Cr_LG_8:9033256-9035868|plus| | Alkaloid | NCS | medium | borderline |
| Cr_21858.1|Cr_LG_8:16650144-16654302|minus| | Alkaloid | NCS | medium | borderline |
| Cr_24257.1|scaffold2365:10046-11775|plus| | Alkaloid | NCS | medium | borderline |
| Cr_01501.1|Cr_LG_1:16877112-16878901|minus| | Alkaloid | NMT | medium | borderline |
| Cr_01552.1|Cr_LG_1:17512030-17518795|minus| | Alkaloid | NMT | medium | pass |
| Cr_01608.1|Cr_LG_1:18198445-18206243|plus| | Alkaloid | NMT | medium | pass |
| Cr_02154.1|Cr_LG_1:28964129-28968514|plus| | Alkaloid | NMT | medium | pass |
| Cr_03188.1|Cr_LG_2:1715587-1721659|minus| | Alkaloid | NMT | low | borderline |
| Cr_03428.1|Cr_LG_2:4387054-4390810|minus| | Alkaloid | NMT | low | borderline |
| Cr_04499.1|Cr_LG_2:25251561-25255045|plus| | Alkaloid | NMT | medium | pass |
| Cr_05076.1|Cr_LG_2:33557573-33560049|minus| | Alkaloid | NMT | low | borderline |
| Cr_05172.1|Cr_LG_3:1168262-1169204|plus| | Alkaloid | NMT | low | borderline |
| Cr_05312.1|Cr_LG_3:3394283-3401099|minus| | Alkaloid | NMT | low | borderline |
| Cr_05335.1|Cr_LG_3:3643085-3653327|minus| | Alkaloid | NMT | low | borderline |
| Cr_05582.1|Cr_LG_3:5835939-5840839|minus| | Alkaloid | NMT | medium | pass |
| Cr_06209.1|Cr_LG_3:13200829-13210090|plus| | Alkaloid | NMT | medium | pass |
| Cr_06348.1|Cr_LG_3:14769007-14776331|minus| | Alkaloid | NMT | medium | pass |
| Cr_06642.1|Cr_LG_3:20560336-20569717|minus| | Alkaloid | NMT | medium | pass |
| Cr_06793.1|Cr_LG_3:24147389-24149266|plus| | Alkaloid | NMT | medium | pass |
| Cr_06794.1|Cr_LG_3:24177895-24179046|plus| | Alkaloid | NMT | medium | pass |
| Cr_07330.1|Cr_LG_3:35589136-35594596|minus| | Alkaloid | NMT | low | borderline |
| Cr_07486.1|Cr_LG_3:37536186-37540731|plus| | Alkaloid | NMT | medium | pass |