PlantSME Plant secondary metabolism enzyme database

Clethra arborea (clethra_arborea)

Imported from atlas release summary for Clethra arborea.

1696
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.9% Alkaloid pathway 22.76% Phenylpropanoid pathway 21.4% Flavonoid pathway 9.14% Rosmarinic acid pathway 6.84% Steroid pathway 5.96%
Family Distribution
C4H 5.89% UGT 5.71% BAHD 4.95% C3'H/CYP98A 4.47% 7DLGT 4.08% F3H 3.95% 4CL 3.9% POD 3.88%
Other Families 63.17%
More Families (97)
CYP76 135 3.08% IFS 133 3.04% H6H 115 2.62% UFGT 105 2.4% F3'H/CYP75B 92 2.1% CAD 92 2.1% TPS 87 1.99% T3O 85 1.94% CAS 82 1.87% NMT 81 1.85% CODM/T6ODM 80 1.83% DWF4/CYP90B1 80 1.83% GES 75 1.71% STR 69 1.57% G8O/G8H 57 1.3% TRI/TRII 56 1.28% HCT 54 1.23% T16H 53 1.21% TAT 52 1.19% LAC 48 1.1% GS 43 0.98% F3'5'H/CYP75A 43 0.98% CSE 43 0.98% 7DLH 42 0.96% FNS 40 0.91% IO 39 0.89% IFR 38 0.87% CYP90D1 38 0.87% CYP71 37 0.84% SLS 36 0.82% F5H/CYP84A 36 0.82% BR6OX2/CYP85A2 36 0.82% SMT1/SMT2/SMT3 36 0.82% RAS 34 0.78% BBE 32 0.73% NCS 28 0.64% COMT 27 0.62% PYKS 24 0.55% PMT 23 0.52% BR6OX1/CYP85A1 22 0.5% ANS/LDOX 21 0.48% ANR 21 0.48% LAMT 20 0.46% CCR 20 0.46% SGD 19 0.43% CPD/CYP90A1 19 0.43% COR 18 0.41% CYP80B1 18 0.41% 16OMT 18 0.41% 8HGO 16 0.37% ROT3/CYP90C1 16 0.37% PAL 15 0.34% CYP719 11 0.25% HPPR 11 0.25% MPO 10 0.23% DFR 10 0.23% CYP80F1 9 0.21% CPR 9 0.21% HMGR 9 0.21% GGPPS 9 0.21% AACT 9 0.21% FPPS 8 0.18% CHS 7 0.16% DET2 7 0.16% MVK 7 0.16% 6OMT_4OMT_SOMT 6 0.14% TYDC_DDC 6 0.14% CNMT 6 0.14% CHI 5 0.11% FLS 5 0.11% CCoAOMT 5 0.11% SQS/FDFT1 5 0.11% SQE 5 0.11% CYP51G1 5 0.11% MVD 5 0.11% ODC 4 0.09% ISY 4 0.09% SMO1/SMO2 4 0.09% HDS/IspG 4 0.09% PMK 4 0.09% DXS 4 0.09% XMT_MXMT_DXMT 3 0.07% TDC 3 0.07% IDI 3 0.07% DWF7 2 0.05% DWF5 2 0.05% MCT/IspD 2 0.05% HMGS 2 0.05% ADC 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (202) View species results
Alkaloid pathway 386 28 GES (64) View species results
Phenylpropanoid pathway 363 13 POD (151) View species results
Flavonoid pathway 155 13 UFGT (63) View species results
Rosmarinic acid pathway 116 7 4CL (38) View species results
Steroid pathway 101 13 CAS (65) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1496 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 305 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
Reset
Gene Pathway Family Confidence Status Best Target
Carb819970041100.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP
Carb930870074330.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Carb941860087790.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP
Carb956520120550.1 Alkaloid 6OMT_4OMT_SOMT low borderline 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP
Carb956520120560.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Carb982500255860.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00006__sp_Q7XB11_4OMT1_PAPSO