Clethra arborea (clethra_arborea)
Imported from atlas release summary for Clethra arborea.
1696
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1696
Candidate Genes
C4H
5.89%
UGT
5.71%
BAHD
4.95%
C3'H/CYP98A
4.47%
7DLGT
4.08%
F3H
3.95%
4CL
3.9%
POD
3.88%
Other Families
63.17%
More Families (97)
CYP76
135
3.08%
IFS
133
3.04%
H6H
115
2.62%
UFGT
105
2.4%
F3'H/CYP75B
92
2.1%
CAD
92
2.1%
TPS
87
1.99%
T3O
85
1.94%
CAS
82
1.87%
NMT
81
1.85%
CODM/T6ODM
80
1.83%
DWF4/CYP90B1
80
1.83%
GES
75
1.71%
STR
69
1.57%
G8O/G8H
57
1.3%
TRI/TRII
56
1.28%
HCT
54
1.23%
T16H
53
1.21%
TAT
52
1.19%
LAC
48
1.1%
GS
43
0.98%
F3'5'H/CYP75A
43
0.98%
CSE
43
0.98%
7DLH
42
0.96%
FNS
40
0.91%
IO
39
0.89%
IFR
38
0.87%
CYP90D1
38
0.87%
CYP71
37
0.84%
SLS
36
0.82%
F5H/CYP84A
36
0.82%
BR6OX2/CYP85A2
36
0.82%
SMT1/SMT2/SMT3
36
0.82%
RAS
34
0.78%
BBE
32
0.73%
NCS
28
0.64%
COMT
27
0.62%
PYKS
24
0.55%
PMT
23
0.52%
BR6OX1/CYP85A1
22
0.5%
ANS/LDOX
21
0.48%
ANR
21
0.48%
LAMT
20
0.46%
CCR
20
0.46%
SGD
19
0.43%
CPD/CYP90A1
19
0.43%
COR
18
0.41%
CYP80B1
18
0.41%
16OMT
18
0.41%
8HGO
16
0.37%
ROT3/CYP90C1
16
0.37%
PAL
15
0.34%
CYP719
11
0.25%
HPPR
11
0.25%
MPO
10
0.23%
DFR
10
0.23%
CYP80F1
9
0.21%
CPR
9
0.21%
HMGR
9
0.21%
GGPPS
9
0.21%
AACT
9
0.21%
FPPS
8
0.18%
CHS
7
0.16%
DET2
7
0.16%
MVK
7
0.16%
6OMT_4OMT_SOMT
6
0.14%
TYDC_DDC
6
0.14%
CNMT
6
0.14%
CHI
5
0.11%
FLS
5
0.11%
CCoAOMT
5
0.11%
SQS/FDFT1
5
0.11%
SQE
5
0.11%
CYP51G1
5
0.11%
MVD
5
0.11%
ODC
4
0.09%
ISY
4
0.09%
SMO1/SMO2
4
0.09%
HDS/IspG
4
0.09%
PMK
4
0.09%
DXS
4
0.09%
XMT_MXMT_DXMT
3
0.07%
TDC
3
0.07%
IDI
3
0.07%
DWF7
2
0.05%
DWF5
2
0.05%
MCT/IspD
2
0.05%
HMGS
2
0.05%
ADC
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 575 | 19 | UGT (202) | View species results |
| Alkaloid pathway | 386 | 28 | GES (64) | View species results |
| Phenylpropanoid pathway | 363 | 13 | POD (151) | View species results |
| Flavonoid pathway | 155 | 13 | UFGT (63) | View species results |
| Rosmarinic acid pathway | 116 | 7 | 4CL (38) | View species results |
| Steroid pathway | 101 | 13 | CAS (65) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1496 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 305 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Carb1660022080.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb889390053250.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb925700069550.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb940550085830.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb945590093270.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb952320107960.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb955060115950.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb959300130940.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb963160145780.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb963160145790.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb963160145810.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb963870149040.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb968150173200.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb969060177860.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Carb971360192990.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb972560199880.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb973520205810.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb976060221840.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb982540255930.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb983110257830.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb988040287180.1 | Alkaloid | NCS | low | borderline | NCS__00004__sp_Q4QTJ2_NCS1_PAPSO |
| Carb989400294870.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Carb989400294890.1 | Alkaloid | NCS | medium | pass | NCS__00004__sp_Q4QTJ2_NCS1_PAPSO |
| Carb989400294900.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Carb989400294910.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Carb991130306540.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Carb991770310270.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Carb991770310300.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |