PlantSME Plant secondary metabolism enzyme database

Clethra arborea (clethra_arborea)

Imported from atlas release summary for Clethra arborea.

2216
Candidate Protein Records
1696
Pathway-Level Records
4382
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 33.9% Alkaloid pathway 22.76% Phenylpropanoid pathway 21.4% Flavonoid pathway 9.14% Rosmarinic acid pathway 6.84% Steroid pathway 5.96%
Family Distribution
C4H 5.89% UGT 5.71% BAHD 4.95% C3'H/CYP98A 4.47% 7DLGT 4.08% F3H 3.95% 4CL 3.9% POD 3.88%
Other Families 63.17%
More Families (97)
CYP76 135 3.08% IFS 133 3.04% H6H 115 2.62% UFGT 105 2.4% F3'H/CYP75B 92 2.1% CAD 92 2.1% TPS 87 1.99% T3O 85 1.94% CAS 82 1.87% NMT 81 1.85% CODM/T6ODM 80 1.83% DWF4/CYP90B1 80 1.83% GES 75 1.71% STR 69 1.57% G8O/G8H 57 1.3% TRI/TRII 56 1.28% HCT 54 1.23% T16H 53 1.21% TAT 52 1.19% LAC 48 1.1% GS 43 0.98% F3'5'H/CYP75A 43 0.98% CSE 43 0.98% 7DLH 42 0.96% FNS 40 0.91% IO 39 0.89% IFR 38 0.87% CYP90D1 38 0.87% CYP71 37 0.84% SLS 36 0.82% F5H/CYP84A 36 0.82% BR6OX2/CYP85A2 36 0.82% SMT1/SMT2/SMT3 36 0.82% RAS 34 0.78% BBE 32 0.73% NCS 28 0.64% COMT 27 0.62% PYKS 24 0.55% PMT 23 0.52% BR6OX1/CYP85A1 22 0.5% ANS/LDOX 21 0.48% ANR 21 0.48% LAMT 20 0.46% CCR 20 0.46% SGD 19 0.43% CPD/CYP90A1 19 0.43% COR 18 0.41% CYP80B1 18 0.41% 16OMT 18 0.41% 8HGO 16 0.37% ROT3/CYP90C1 16 0.37% PAL 15 0.34% CYP719 11 0.25% HPPR 11 0.25% MPO 10 0.23% DFR 10 0.23% CYP80F1 9 0.21% CPR 9 0.21% HMGR 9 0.21% GGPPS 9 0.21% AACT 9 0.21% FPPS 8 0.18% CHS 7 0.16% DET2 7 0.16% MVK 7 0.16% 6OMT_4OMT_SOMT 6 0.14% TYDC_DDC 6 0.14% CNMT 6 0.14% CHI 5 0.11% FLS 5 0.11% CCoAOMT 5 0.11% SQS/FDFT1 5 0.11% SQE 5 0.11% CYP51G1 5 0.11% MVD 5 0.11% ODC 4 0.09% ISY 4 0.09% SMO1/SMO2 4 0.09% HDS/IspG 4 0.09% PMK 4 0.09% DXS 4 0.09% XMT_MXMT_DXMT 3 0.07% TDC 3 0.07% IDI 3 0.07% DWF7 2 0.05% DWF5 2 0.05% MCT/IspD 2 0.05% HMGS 2 0.05% ADC 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 575 19 UGT (202) View species results
Alkaloid pathway 386 28 GES (64) View species results
Phenylpropanoid pathway 363 13 POD (151) View species results
Flavonoid pathway 155 13 UFGT (63) View species results
Rosmarinic acid pathway 116 7 4CL (38) View species results
Steroid pathway 101 13 CAS (65) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1496 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 305 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
Carb989080293420.1 Phenylpropanoid POD medium pass POD__00013__sp_Q4W1I8_PER1_ZINEL
Carb989430295340.1 Phenylpropanoid POD medium pass POD__00001__sp_A5H452_PER70_MAIZE
Carb989460296090.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Carb991130306530.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Carb991480309030.1 Phenylpropanoid POD medium pass POD__00028__sp_Q9ZVD5_AGO4_ARATH
Carb991630309420.1 Phenylpropanoid POD medium pass POD__00016__sp_Q6QPJ6_PRXQ_POPJC
Carb991670309710.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH